RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 NTN1O95631 604 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 ITGB2P05107 769 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST1H2BJP06899 126 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST1H2BOP23527 126 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 CD34P28906 385 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 PYCR1P32322 319 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST1H2BBP33778 126 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 KIR2DL1P43626 348 aaPredicted RBP8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 SLC6A12P48065 614 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST1H2BDP58876 126 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST1H2BCP62807 126 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST2H2BEQ16778 126 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 PGGHGQ32M88 737 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 LRRC73Q5JTD7 316 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 LCTLQ6UWM7 567 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 DNM1P46Q6ZS02 220 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST2H3AQ71DI3 136 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 THNSL2Q86YJ6 484 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 TRAM1L1Q8N609 369 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 FRMD1Q8N878 549 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 RAB8BQ92930 207 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST1H2BHQ93079 126 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 MR1Q95460 341 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 NTNG2Q96CW9 530 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HAVCR1Q96D42 359 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 PACRGQ96M98 296 aaPredicted RBP8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 WDR92Q96MX6 357 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 OR5B2Q96R09 309 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST1H2BNQ99877 126 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HIST1H2BMQ99879 126 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 RAB33BQ9H082 229 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 NCOR1P1Q9H4R4 102 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 MED17Q9NVC6 651 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 CALML5Q9NZT1 146 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 MTFP1Q9UDX5 166 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 HDGFL3Q9Y3E1 203 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 A0A0C4DFX4 3053 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 COL4A3Q01955 1670 aa8.6□□□□□ -1.03
CTNNA1-243ENST00000540387 CDHR4A6H8M9 788 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 A6NJY4 79 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 NPC1O15118 1278 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 OR2C1O95371 312 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 PTBP3O95758 552 aaKnown RBP8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 GBAP04062 536 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 RAB40ALP0C0E4 278 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 THEGLP0DJG4 465 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 HKR1P10072 659 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 ALPPL2P10696 532 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 ZNF16P17020 682 aaPredicted RBP8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 TIA1P31483 386 aaKnown RBP eCLIP8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 APLNRP35414 380 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 DHPSP49366 369 aaPredicted RBP8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 PNLIPRP1P54315 467 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 TMEM196Q5HYL7 178 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 DCAF10Q5QP82 559 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 CLEC2AQ6UVW9 174 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 NAXEQ8NCW5 288 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 OR4K17Q8NGC6 315 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 OR1J2Q8NGS2 313 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 OR1J1Q8NGS3 322 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 NPRL2Q8WTW4 380 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 RAB40AQ8WXH6 277 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 FOXRED1Q96CU9 486 aaPredicted RBP8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 CXorf40BQ96DE9 158 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 OR14A2Q96R54 314 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 ZNF426Q9BUY5 554 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 SPACA1Q9HBV2 294 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 A4GALTQ9NPC4 353 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 NRIP3Q9NQ35 241 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 OR5V1Q9UGF6 321 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 CHRNA9Q9UGM1 479 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 IL36AQ9UHA7 158 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 ADAM18Q9Y3Q7 739 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 WIF1Q9Y5W5 379 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 A0A087WUJ7 227 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 EDDM13A0A1B0GTR0 161 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 PRAMEF26H0Y7S4 382 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 M0R143 59 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 OR1F1O43749 312 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 IL18BPO95998 194 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 CSF1P09603 554 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 TMIGD3P0DMS9 266 aaPredicted RBP8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 SRFP11831 508 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 GTF2F2P13984 249 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 RPS2P15880 293 aaKnown RBP8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 TNFRSF4P43489 277 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 METAP1P53582 386 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 RPS23P62266 143 aaKnown RBP8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 RHEBQ15382 184 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 PNLIPRP3Q17RR3 467 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 PRSS53Q2L4Q9 553 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 ZNF674Q2M3X9 581 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 PRAMEF17Q5VTA0 474 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 BTNL8Q6UX41 500 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 ZNF433Q8N7K0 673 aaPredicted RBP8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 ADAMTS17Q8TE56 1095 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 EID2BQ96D98 161 aa8.59□□□□□ -1.03
CTNNA1-243ENST00000540387 SLC25A18Q9H1K4 315 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms