RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 CSAG2Q9Y5P2 127 aa11.78□□□□□ -0.52
MSH6-210ENST00000540021 LAMA2P24043 3122 aaKnown RBP11.77□□□□□ -0.52
MSH6-210ENST00000540021 RFPL4AA6NLU0 287 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 RFPL4AL1F8VTS6 287 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 H3BML4 177 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 TO15178 435 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 MED6O75586 246 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 MAMDC2Q7Z304 686 aaPredicted RBP11.77□□□□□ -0.52
MSH6-210ENST00000540021 SPRED2Q7Z698 418 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 TEX19Q8NA77 164 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 OR5D18Q8NGL1 313 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 HAVCR2Q8TDQ0 301 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 STK35Q8TDR2 534 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 ATOH1Q92858 354 aaPredicted RBP11.77□□□□□ -0.52
MSH6-210ENST00000540021 TGM7Q96PF1 710 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 C20orf24Q9BUV8 137 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 ZNF629Q9UEG4 869 aaPredicted RBP11.77□□□□□ -0.52
MSH6-210ENST00000540021 KLHDC2Q9Y2U9 406 aa11.77□□□□□ -0.52
MSH6-210ENST00000540021 LAMA3Q16787 3333 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 PLXNA3P51805 1871 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 SYT7O43581 403 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 SNAPINO95295 136 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 RAB6AP20340 208 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 BDKRB2P30411 391 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 DHRS2Q13268 280 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 GALNT16Q8N428 558 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 NPEPL1Q8NDH3 523 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 MARVELD3Q96A59 401 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 SLC25A21Q9BQT8 299 aaPredicted RBP11.77□□□□□ -0.53
MSH6-210ENST00000540021 NUDT22Q9BRQ3 303 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 PIGMQ9H3S5 423 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 THAP10Q9P2Z0 257 aaPredicted RBP11.77□□□□□ -0.53
MSH6-210ENST00000540021 C2orf72A6NCS6 295 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 C1orf196B1AJZ1 125 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 CTDSPLO15194 276 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 ZNF264O43296 627 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 WDPCPO95876 746 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 SLC35E2P0CK97 266 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 PLCXD2Q0VAA5 305 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 BAMBIQ13145 260 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 WDR38Q5JTN6 314 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 OR4K17Q8NGC6 315 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 ELP5Q8TE02 316 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 DCBLD2Q96PD2 775 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 COPS7AQ9UBW8 275 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 VDAC3Q9Y277 283 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 FAM96BQ9Y3D0 163 aa11.77□□□□□ -0.53
MSH6-210ENST00000540021 LSM5Q9Y4Y9 91 aaKnown RBP11.77□□□□□ -0.53
MSH6-210ENST00000540021 KLF4O43474 513 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 ALOX12BO75342 701 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 B3GALNT1O75752 331 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 GLAP06280 429 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 ERCC1P07992 297 aaPredicted RBP11.76□□□□□ -0.53
MSH6-210ENST00000540021 SLC2A1P11166 492 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 MYOGP15173 224 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 PPP1CAP62136 330 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 PMPCAQ10713 525 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 PEA15Q15121 130 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 SLC22A6Q4U2R8 563 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 SLC25A24Q6NUK1 477 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 MDGA2Q7Z553 956 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 MCATQ8IVS2 390 aaKnown RBP11.76□□□□□ -0.53
MSH6-210ENST00000540021 OR6N1Q8NGY5 312 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 OR2AJ1Q8NGZ0 328 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 C16orf52Q8NHV5 167 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 FGGYQ96C11 551 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 ZNF649Q9BS31 505 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 RGCCQ9H4X1 137 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 PIPOXQ9P0Z9 390 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 CHRNA9Q9UGM1 479 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 MOKQ9UQ07 419 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 A0A0J9YY10 115 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 SDHAP31040 664 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 OR1D4P47884 311 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 CBLN3Q6UW01 205 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 Q6ZSR6 202 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 ACOT7LQ6ZUV0 252 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 SFTPA2Q8IWL1 248 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 THRSPQ92748 146 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 KTI12Q96EK9 354 aaPredicted RBP11.76□□□□□ -0.53
MSH6-210ENST00000540021 UBQLN4Q9NRR5 601 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 ZNF175Q9Y473 711 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 A0A0A6YYH2 397 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 A6NJ64 397 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 PTP4A3O75365 173 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 GAAP10253 952 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 SERPINF1P36955 418 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 EMP2P54851 167 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 GLO1Q04760 184 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 TOMM20Q15388 145 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 PAN3Q58A45 887 aaKnown RBP11.76□□□□□ -0.53
MSH6-210ENST00000540021 HSD17B13Q7Z5P4 300 aaPredicted RBP11.76□□□□□ -0.53
MSH6-210ENST00000540021 GVQW1Q8N7I0 195 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 OR10Z1Q8NGY1 313 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 RSC1A1Q92681 617 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 ZNF764Q96H86 408 aaPredicted RBP11.76□□□□□ -0.53
MSH6-210ENST00000540021 OR2A5Q96R48 311 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 LMF2Q9BU23 707 aaKnown RBP11.76□□□□□ -0.53
MSH6-210ENST00000540021 HAO2Q9NYQ3 351 aa11.76□□□□□ -0.53
MSH6-210ENST00000540021 PRR13Q9NZ81 148 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms