RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 POM121L2Q96KW2 1035 aa9.77□□□□□ -0.85
CLSTN3-209ENST00000539982 SLC19A3Q9BZV2 496 aa9.77□□□□□ -0.85
CLSTN3-209ENST00000539982 OR2J1Q9GZK6 312 aa9.77□□□□□ -0.85
CLSTN3-209ENST00000539982 CCDC134Q9H6E4 229 aa9.77□□□□□ -0.85
CLSTN3-209ENST00000539982 RMND5AQ9H871 391 aa9.77□□□□□ -0.85
CLSTN3-209ENST00000539982 MSL2Q9HCI7 577 aa9.77□□□□□ -0.85
CLSTN3-209ENST00000539982 PNPOQ9NVS9 261 aa9.77□□□□□ -0.85
CLSTN3-209ENST00000539982 C1RLQ9NZP8 487 aa9.77□□□□□ -0.85
CLSTN3-209ENST00000539982 TRIM33Q9UPN9 1127 aa9.77□□□□□ -0.85
CLSTN3-209ENST00000539982 MDFIC2A0A1B0GVS7 189 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 C5orf49A4QMS7 147 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 SDHDO14521 159 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 TPST2O60704 377 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 SHOX2O60902 331 aaPredicted RBP9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 WNT2P09544 360 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 SELEP16581 610 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 CPT2P23786 658 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 WNT5AP41221 380 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 ZNF84P51523 738 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 CDH12P55289 794 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 KRTAP10-3P60369 221 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 NCALDP61601 193 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 BTG1P62324 171 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 PAX2Q02962 417 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 CDK5R2Q13319 367 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 MELKQ14680 651 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 HLXQ14774 488 aaPredicted RBP9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 ZMYND11Q15326 602 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 DEFB112Q30KQ8 113 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 SWT1Q5T5J6 900 aaKnown RBP9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 FIP1L1Q6UN15 594 aaKnown RBP9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 BTNL3Q6UXE8 466 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 LINC00114Q6XXX2 140 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 C1QL4Q86Z23 238 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 SAMD8Q96LT4 415 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 MAGEB18Q96M61 343 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 ARHGDIGQ99819 225 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 SPATA5L1Q9BVQ7 753 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 KCNN2Q9H2S1 579 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 RAD21L1Q9H4I0 556 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 NANOGQ9H9S0 305 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 SIAEQ9HAT2 523 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 LRCH1Q9Y2L9 728 aa9.76□□□□□ -0.85
CLSTN3-209ENST00000539982 LOC100509620A0A075B734 347 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 H3BSA7 217 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 CLIC1O00299 241 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 RNF13O43567 381 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 RRP9O43818 475 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 TGDSO95455 350 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 IGHG1P01857 330 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 TNFRSF1AP19438 455 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 RBMXP38159 391 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 GDI2P50395 445 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 RGS8P57771 180 aaPredicted RBP9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 CLRN1P58418 232 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 PPP1CBP62140 327 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 FADDQ13158 208 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 ZNF74Q16587 644 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 TAF9Q16594 264 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 MTX3Q5HYI7 312 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 REEP3Q6NUK4 255 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 Q6YL49 198 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 MSANTD1Q6ZTZ1 278 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 KRT73Q86Y46 540 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 POU5F2Q8N7G0 328 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 OR10S1Q8NGN2 331 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 THOC1Q96FV9 657 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 ZNF347Q96SE7 839 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 SLC30A2Q9BRI3 323 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 MRPL13Q9BYD1 178 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 CCNB1IP1Q9NPC3 277 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 NOX4Q9NPH5 578 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 TNFRSF19Q9NS68 423 aa9.75□□□□□ -0.85
CLSTN3-209ENST00000539982 TRAV40A0A0B4J280 105 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 IGHV2-70DA0A0C4DH43 119 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 KIR2DS1A0A191URI9 304 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 SLC22A31A6NKX4 558 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 ICMTO60725 284 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 CH25HO95992 272 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 HIST1H2ABP04908 130 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 IDO1P14902 403 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 ZNF32P17041 273 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 TNFSF4P23510 183 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 EPHA3P29320 983 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 MDH2P40926 338 aaKnown RBP9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 BPIFB3P59826 476 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 MRPS34P82930 218 aaKnown RBP9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 STX3Q13277 289 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 PDCD1Q15116 288 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 C6orf10Q5SRN2 563 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 HIST3H2AQ7L7L0 130 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 ZER1Q7Z7L7 766 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 RANBP3LQ86VV4 465 aaPredicted RBP9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 MUC20Q8N307 709 aaPredicted RBP9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 TMEM86BQ8N661 226 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 NFKBIDQ8NI38 313 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 ABHD4Q8TB40 342 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 LRRC8CQ8TDW0 803 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 RAB40AQ8WXH6 277 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 HIST1H2ACQ93077 130 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms