RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CCNB1IP1Q9NPC3 277 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 KRCC1Q9NPI7 259 aaPredicted RBP12.72□□□□□ -0.37
USP28-204ENST00000537642 NRIP3Q9NQ35 241 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 ACTR3BQ9P1U1 418 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 MYEF2Q9P2K5 600 aaKnown RBP12.72□□□□□ -0.37
USP28-204ENST00000537642 IL20RAQ9UHF4 553 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 ADAM21Q9UKJ8 722 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 AURKCQ9UQB9 309 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 TEX13CA0A0J9YWL9 993 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 A0A1W2PPL8 197 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 PRSS37A4D1T9 235 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 VWC2LB2RUY7 222 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 SYNGR3O43761 229 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 CD5LO43866 347 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 CST2P09228 141 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 CALB2P22676 271 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 SDHAP31040 664 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 RRM2P31350 389 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 APLNRP35414 380 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 PSG4Q00888 419 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 KRR1Q13601 381 aaKnown RBP12.71□□□□□ -0.37
USP28-204ENST00000537642 ENDOGQ14249 297 aaKnown RBP12.71□□□□□ -0.37
USP28-204ENST00000537642 ZDHHC21Q8IVQ6 265 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 OR1J2Q8NGS2 313 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 AKR7LQ8NHP1 331 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 NEU4Q8WWR8 484 aaPredicted RBP12.71□□□□□ -0.37
USP28-204ENST00000537642 OR51B6Q9H340 312 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 TPK1Q9H3S4 243 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 MYOZ1Q9NP98 299 aaPredicted RBP12.71□□□□□ -0.37
USP28-204ENST00000537642 POLE4Q9NR33 117 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 IER3IP1Q9Y5U9 82 aa12.71□□□□□ -0.37
USP28-204ENST00000537642 ABCA2Q9BZC7 2435 aa12.71□□□□□ -0.38
USP28-204ENST00000537642 LOC100509620A0A075B734 347 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 LOC390937A0A1W2PQ73 354 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 TCRBV5S2A0A599 114 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 M0R233 179 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 NDUFS8O00217 210 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 XKRYO14609 159 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 IMPA2O14732 288 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 AHCYL1O43865 530 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 TP53P04637 393 aaPredicted RBP12.7□□□□□ -0.38
USP28-204ENST00000537642 CTLA4P16410 223 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 MSR1P21757 451 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 STOMP27105 288 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 ALDH3B1P43353 468 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 NR4A2P43354 598 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 UCP2P55851 309 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 ERVS71-1P61550 626 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 PPP2R2BQ00005 443 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 MAD2L1BPQ15013 274 aaPredicted RBP12.7□□□□□ -0.38
USP28-204ENST00000537642 CARTPTQ16568 116 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 TMEM249Q2WGJ8 235 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 GPR139Q6DWJ6 353 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 RGS7BPQ6MZT1 257 aaPredicted RBP12.7□□□□□ -0.38
USP28-204ENST00000537642 SMARCD3Q6STE5 483 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 UGT2A3Q6UWM9 527 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 DPY19L2P2Q6ZN68 376 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 ARHGAP24Q8N264 748 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 POM121L2Q96KW2 1035 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 FOXN4Q96NZ1 517 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 PIMREGQ9BSJ6 248 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 ZNF416Q9BWM5 594 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 OR2H1Q9GZK4 316 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 WNT5BQ9H1J7 359 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 LRMDAQ9H2I8 198 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 REV1Q9UBZ9 1251 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 DUSP13Q9UII6 198 aa12.7□□□□□ -0.38
USP28-204ENST00000537642 SOCS2O14508 198 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 OR10H3O60404 316 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 STAMBPO95630 424 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 TXNDC12O95881 172 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 CLPTM1O96005 669 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 LCKP06239 509 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 ERCC1P07992 297 aaPredicted RBP12.69□□□□□ -0.38
USP28-204ENST00000537642 DAOP14920 347 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 ZNF250P15622 560 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 USF1P22415 310 aaPredicted RBP12.69□□□□□ -0.38
USP28-204ENST00000537642 CCNOP22674 350 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 FPR3P25089 353 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 WNT5AP41221 380 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 GUCA1AP43080 201 aaPredicted RBP12.69□□□□□ -0.38
USP28-204ENST00000537642 RAD52P43351 418 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 MS4A2Q01362 244 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 MTX3Q5HYI7 312 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 LCN8Q6JVE9 175 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 PTCHD4Q6ZW05 846 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 FANK1Q8TC84 345 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 BCL2L14Q9BZR8 327 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 SYT4Q9H2B2 425 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 EMC7Q9NPA0 242 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 VSX1Q9NZR4 365 aaPredicted RBP12.69□□□□□ -0.38
USP28-204ENST00000537642 TIMM10BQ9Y5J6 103 aa12.69□□□□□ -0.38
USP28-204ENST00000537642 IGLV3-9A0A075B6K5 115 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 A0A1W2PPW3 197 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 C5orf49A4QMS7 147 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 C12orf71A8MTZ7 269 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 TLX2O43763 284 aaPredicted RBP12.68□□□□□ -0.38
USP28-204ENST00000537642 SLC16A7O60669 478 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 PPP1R3DO95685 299 aa12.68□□□□□ -0.38
USP28-204ENST00000537642 APEHP13798 732 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms