RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 CCDC126Q96EE4 140 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 TXNDC15Q96J42 360 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 PLEKHA8Q96JA3 519 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 TRNT1Q96Q11 434 aaKnown RBP6.8□□□□□ -1.32
CD44-232ENST00000531118 OR8B2Q96RD0 313 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 RHOXF2Q9BQY4 288 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 DPY30Q9C005 99 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 TRIM15Q9C019 465 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 OR2J1Q9GZK6 312 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 RAB17Q9H0T7 212 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 MMP28Q9H239 520 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 LRMDAQ9H2I8 198 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 DPAGT1Q9H3H5 408 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 RNF121Q9H920 327 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 TMEM165Q9HC07 324 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 TMEM38BQ9NVV0 291 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 ZNRD1Q9P1U0 126 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 KLHL14Q9P2G3 628 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 SIGLEC9Q9Y336 463 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 DNAJC15Q9Y5T4 150 aa6.8□□□□□ -1.32
CD44-232ENST00000531118 IGKV1D-42A0A075B6H8 117 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 IGHV1-69DA0A0B4J2H0 117 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 IQCMA0A1B0GVH7 501 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 BTBD17A6NE02 478 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 TMEM233B4DJY2 109 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 H3BS24 57 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 TMEM178BH3BS89 294 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 H3BSA7 217 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 RNASET2O00584 256 aaKnown RBP6.79□□□□□ -1.32
CD44-232ENST00000531118 PHYHO14832 338 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 SERPINI2O75830 405 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 PTHP01270 115 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 IGHV1-69P01742 117 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 C1QCP02747 245 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 NQO1P15559 274 aaKnown RBP6.79□□□□□ -1.32
CD44-232ENST00000531118 IGLL1P15814 213 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 CCNOP22674 350 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 CBLP22681 906 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 EPHA3P29320 983 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 CRHR1P34998 444 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 APLNRP35414 380 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 GP2P55259 537 aaKnown RBP6.79□□□□□ -1.32
CD44-232ENST00000531118 NSUN5P1Q3KNT7 163 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 SLC36A2Q495M3 483 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 MTX3Q5HYI7 312 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 RNF220Q5VTB9 566 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 SLC27A4Q6P1M0 643 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 TIFABQ6ZNK6 161 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 SLC16A14Q7RTX9 510 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 DPPA2Q7Z7J5 298 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 ANKRD46Q86W74 232 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 VRK2Q86Y07 508 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 SCCPDHQ8NBX0 429 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 OR4K5Q8NGD3 323 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 KLF14Q8TD94 323 aaPredicted RBP6.79□□□□□ -1.32
CD44-232ENST00000531118 C10orf82Q8WW14 230 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 TAAR8Q969N4 342 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 SAMD8Q96LT4 415 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 PPP3R2Q96LZ3 170 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 SLC19A3Q9BZV2 496 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 ZDHHC18Q9NUE0 388 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 FBLN5Q9UBX5 448 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 CLN8Q9UBY8 286 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 MARCOQ9UEW3 520 aaPredicted RBP6.79□□□□□ -1.32
CD44-232ENST00000531118 MIOXQ9UGB7 285 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 PPP1R3CQ9UQK1 317 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 ZNF443Q9Y2A4 671 aaPredicted RBP6.79□□□□□ -1.32
CD44-232ENST00000531118 USH1CQ9Y6N9 552 aa6.79□□□□□ -1.32
CD44-232ENST00000531118 A0A087WUJ7 227 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 LCE6AA0A183 80 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 EXOC1LA0A1B0GW35 172 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 ZNF726A6NNF4 738 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 ZNF879B4DU55 563 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 MS4A18H0YCH9 400 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 OR2T1O43869 369 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 TIMM8AO60220 97 aaPredicted RBP6.78□□□□□ -1.32
CD44-232ENST00000531118 NPHS1O60500 1241 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 PEX11AO75192 247 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 TOX4O94842 621 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 ZNF205O95201 554 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 MMP7P09237 267 aaPredicted RBP6.78□□□□□ -1.32
CD44-232ENST00000531118 PRPS1L1P21108 318 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 TNFSF4P23510 183 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 CASQ1P31415 396 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 CHI3L1P36222 383 aaPredicted RBP6.78□□□□□ -1.32
CD44-232ENST00000531118 TGFBR2P37173 567 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 DNAJB13P59910 316 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 HSF2Q03933 536 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 PLP2Q04941 152 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 PUDPQ08623 228 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 PGS1Q32NB8 556 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 MS4A18Q3C1V0 323 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 ZNF404Q494X3 552 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 KLHL22Q53GT1 634 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 DEFB121Q5J5C9 76 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 IL23RQ5VWK5 629 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 WDR25Q64LD2 544 aaPredicted RBP6.78□□□□□ -1.32
CD44-232ENST00000531118 C5orf46Q6UWT4 87 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 NHLRC1Q6VVB1 395 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 WDR88Q6ZMY6 472 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms