RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	PAGE3	Q5JUK9	113 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	C10orf128	Q5T292	105 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	BLOC1S3	Q6QNY0	202 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	HDDC2	Q7Z4H3	204 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	FUNDC1	Q8IVP5	155 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	OR6T1	Q8NGN1	323 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	ZBTB9	Q96C00	473 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	SPDL1	Q96EA4	605 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	MPP4	Q96JB8	637 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	PATZ1	Q9HBE1	687 aa	Known RBP	13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	MSL2	Q9HCI7	577 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	DCAF16	Q9NXF7	216 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	KLHL21	Q9UJP4	597 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	SLC7A7	Q9UM01	511 aa		13.29	□□□□□ -0.28
LMNA-223	ENST00000515459	LOC100509620	A0A075B734	347 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	TRBV5-3	A0A0A0MS03	114 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	TRAPPC13	A5PLN9	417 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	TRMU	O75648	421 aa	Known RBP	13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	LYPD3	O95274	346 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	THY1	P04216	161 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	F13B	P05160	661 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	ACADS	P16219	412 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	CDA	P32320	146 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	SLC6A9	P48067	706 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	ZNF133	P52736	654 aa	Predicted RBP	13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	PCBP3	P57721	371 aa	Known RBP	13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	SEC61A1	P61619	476 aa	Known RBP	13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	PPP1CB	P62140	327 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	RPL18	Q07020	188 aa	Known RBP	13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	TMEM155	Q4W5P6	130 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	RFPL4B	Q6ZWI9	263 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	ABHD4	Q8TB40	342 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	ASB10	Q8WXI3	467 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	ZNF426	Q9BUY5	554 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	TMEM106B	Q9NUM4	274 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	CCDC167	Q9P0B6	97 aa		13.28	□□□□□ -0.28
LMNA-223	ENST00000515459	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	13.28	□□□□□ -0.28
LMNA-223	ENST00000515459		A8MXK9	166 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459		H3BSA7	217 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459		M0QX08	132 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	SLC2A10	O95528	541 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	OPN1SW	P03999	348 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	VIM	P08670	466 aa	Known RBP	13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	MDK	P21741	143 aa	Predicted RBP	13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	MTNR1A	P48039	350 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	DAP3	P51398	398 aa	Known RBP	13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	UGT2B15	P54855	530 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	PSG4	Q00888	419 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	SGCA	Q16586	387 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	OCLN	Q16625	522 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	MTX3	Q5HYI7	312 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	LEG1	Q6P5S2	330 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	EPGN	Q6UW88	154 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	ZER1	Q7Z7L7	766 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	CROCCP2	Q86T23	111 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	ALDH16A1	Q8IZ83	802 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	GPR32P1	Q8NGA4	272 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	AKR7L	Q8NHP1	331 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	VANGL1	Q8TAA9	524 aa	Predicted RBP	13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	TAF15	Q92804	592 aa	Known RBP eCLIP	13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	NABP1	Q96AH0	204 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	SMURF2	Q9HAU4	748 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	ELOVL3	Q9HB03	270 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	STX18	Q9P2W9	335 aa	Known RBP	13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	UGT2A1	Q9Y4X1	527 aa		13.27	□□□□□ -0.29
LMNA-223	ENST00000515459	ICMT	O60725	284 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	NGF	P01138	241 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	TNFRSF1A	P19438	455 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	BTG1	P62324	171 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	ERVK-25	P63136	954 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	HNRNPA0	Q13151	305 aa	Known RBP	13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	ESCO2	Q56NI9	601 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	FAM27B	Q5VT28	67 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	LRRC28	Q86X40	367 aa	Predicted RBP	13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	RBM45	Q8IUH3	476 aa	Known RBP	13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	PARP8	Q8N3A8	854 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	ZNF283	Q8N7M2	679 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	C11orf65	Q8NCR3	313 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	OR4D11	Q8NGI4	311 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	OR52E2	Q8NGJ4	325 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	TMIGD2	Q96BF3	282 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	SAMD8	Q96LT4	415 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	MEPE	Q9NQ76	525 aa	Predicted RBP	13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	INIP	Q9NRY2	104 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	OR5V1	Q9UGF6	321 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459	USH1C	Q9Y6N9	552 aa		13.26	□□□□□ -0.29
LMNA-223	ENST00000515459		F5H0A9	414 aa	Predicted RBP	13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	POLR3G	O15318	223 aa	Predicted RBP	13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	TIMM8A	O60220	97 aa	Predicted RBP	13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	NR2C1	P13056	603 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	FUT1	P19526	365 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	CD247	P20963	164 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	TNFSF4	P23510	183 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	PCGF2	P35227	344 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	ARHGDIA	P52565	204 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	PAX8	Q06710	450 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	FMOD	Q06828	376 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	CDK5R2	Q13319	367 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	ZMYND11	Q15326	602 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	TAF11	Q15544	211 aa		13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms