RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 IPCEF1Q8WWN9 437 aaPredicted RBP13.83□□□□□ -0.2
VIM-208ENST00000497849 TMEM54Q969K7 222 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 CHIAQ9BZP6 476 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 EGLN1Q9GZT9 426 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 C1orf198Q9H425 327 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 MARCH7Q9H992 704 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 TPT1P8Q9HAU6 139 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 P2RX2Q9UBL9 471 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.83□□□□□ -0.2
VIM-208ENST00000497849 TRBV5-3A0A0A0MS03 114 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 CLIC1O00299 241 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 PIN1P1O15428 100 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 SERPINI2O75830 405 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 CLPXO76031 633 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 PRB2P02812 416 aaPredicted RBP13.82□□□□□ -0.2
VIM-208ENST00000497849 BGLAPP02818 100 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 HTR2AP28223 471 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 CRISP3P54108 245 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 PUDPQ08623 228 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 RUNDC3AQ59EK9 446 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 SPATA46Q5T0L3 261 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 LRFN4Q6PJG9 635 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 BRD3OSQ6XYD6 125 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 LRRC28Q86X40 367 aaPredicted RBP13.82□□□□□ -0.2
VIM-208ENST00000497849 ZNF101Q8IZC7 436 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 C10orf111Q8N326 155 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 DPP10Q8N608 796 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 CPEB3Q8NE35 698 aaKnown RBP13.82□□□□□ -0.2
VIM-208ENST00000497849 OR1J2Q8NGS2 313 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 MARS2Q96GW9 593 aaKnown RBP13.82□□□□□ -0.2
VIM-208ENST00000497849 NSL1Q96IY1 281 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 MOGAT1Q96PD6 335 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 IKZF5Q9H5V7 419 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 RNF121Q9H920 327 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 GLTPQ9NZD2 209 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 CALML5Q9NZT1 146 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 OR5V1Q9UGF6 321 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 ZNF232Q9UNY5 417 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 RNF114Q9Y508 228 aa13.82□□□□□ -0.2
VIM-208ENST00000497849 A0A1B0GWA3 101 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 PLSCR5A0PG75 271 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 LRRN3E7EW58 273 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 G3V4G9 280 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 ATP5HO75947 161 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 CD55P08174 381 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 ETFAP13804 333 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 PRDX6P30041 224 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 BIDP55957 195 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 BNIP1Q12981 228 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 ZMYND11Q15326 602 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 THEM4Q5T1C6 240 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 TMEM53Q6P2H8 277 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 PXKQ7Z7A4 578 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 LSMEM1Q8N8F7 131 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 OR4K5Q8NGD3 323 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 OR10S1Q8NGN2 331 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 OR6S1Q8NH40 331 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 LINC01006Q8NI28 216 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 SLC35B4Q969S0 331 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 ZDHHC16Q969W1 377 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 DACT3Q96B18 629 aaPredicted RBP13.81□□□□□ -0.2
VIM-208ENST00000497849 CMTM5Q96DZ9 223 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 CGREF1Q99674 301 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 CPPED1Q9BRF8 314 aaPredicted RBP13.81□□□□□ -0.2
VIM-208ENST00000497849 TMEM106BQ9NUM4 274 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 RPS6KB2Q9UBS0 482 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 TAGLN3Q9UI15 199 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 KLHL21Q9UJP4 597 aa13.81□□□□□ -0.2
VIM-208ENST00000497849 FXYD1O00168 92 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 PLPP3O14495 311 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 PLXNB1O43157 2135 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 FARS2O95363 451 aaKnown RBP13.8□□□□□ -0.2
VIM-208ENST00000497849 KRT75O95678 551 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 NUDT7P0C024 238 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 AHCYP23526 432 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 WNT5AP41221 380 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 CRATP43155 626 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 PROK1P58294 105 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 MTPNP58546 118 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 BTG1P62324 171 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 ZNF718Q3SXZ3 478 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 SLC36A2Q495M3 483 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 ESCO2Q56NI9 601 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 KPRPQ5T749 579 aaPredicted RBP13.8□□□□□ -0.2
VIM-208ENST00000497849 FAM205BPQ63HN1 556 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 Q6YL49 198 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 TMEM19Q96HH6 336 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 SIGLEC11Q96RL6 698 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 ASPNQ9BXN1 380 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 LRMDAQ9H2I8 198 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 ARMC7Q9H6L4 198 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 MRPL39Q9NYK5 338 aaKnown RBP13.8□□□□□ -0.2
VIM-208ENST00000497849 IL20RAQ9UHF4 553 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 IFT52Q9Y366 437 aa13.8□□□□□ -0.2
VIM-208ENST00000497849 A0A0G2JPF8 293 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 IQCMA0A1B0GVH7 501 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 BBIP1A8MTZ0 92 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 HNRNPCL2B2RXH8 293 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 HNRNPCL3B7ZW38 293 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 C3orf80F5H4A9 247 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms