RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 GGTLC2Q14390 218 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 SEC23BQ15437 767 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 MSMPQ1L6U9 139 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 MESTQ5EB52 335 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 FAM27BQ5VT28 67 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 GPR139Q6DWJ6 353 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 FOXL2NBQ6ZUU3 175 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 ZCCHC24Q8N2G6 241 aaKnown RBP12.98□□□□□ -0.33
USP39-217ENST00000491659 PAQR4Q8N4S7 273 aaPredicted RBP12.98□□□□□ -0.33
USP39-217ENST00000491659 FITM2Q8N6M3 262 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 CCDC197Q8NCU1 140 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 ZNF540Q8NDQ6 660 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 Q96M85 177 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 GPX7Q96SL4 187 aaPredicted RBP12.98□□□□□ -0.33
USP39-217ENST00000491659 BCL2L14Q9BZR8 327 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 TPK1Q9H3S4 243 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 YAE1D1Q9NRH1 226 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 REV1Q9UBZ9 1251 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 DUSP13Q9UII6 198 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 NAV3Q8IVL0 2385 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 TEX13CA0A0J9YWL9 993 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 VWC2LB2RUY7 222 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 AHCYL1O43865 530 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 FAM107AO95990 144 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 MSR1P21757 451 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 CCNOP22674 350 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 STOMP27105 288 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 LAP3P28838 519 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 SDHAP31040 664 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 NKPD1Q17RQ9 610 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 FAM122BQ7Z309 247 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 LRP11Q86VZ4 500 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 ALDH16A1Q8IZ83 802 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 ICA1LQ8NDH6 482 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 CPEB3Q8NE35 698 aaKnown RBP12.97□□□□□ -0.33
USP39-217ENST00000491659 FANK1Q8TC84 345 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 SNX33Q8WV41 574 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 RASD2Q96D21 266 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 GPR160Q9UJ42 338 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 TMCC3Q9ULS5 477 aa12.97□□□□□ -0.33
USP39-217ENST00000491659 YLPM1P49750 1951 aaKnown RBP12.97□□□□□ -0.33
USP39-217ENST00000491659 PRSS37A4D1T9 235 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 A8MV72 311 aaPredicted RBP12.96□□□□□ -0.33
USP39-217ENST00000491659 B2RBV5 119 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 OR10H3O60404 316 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 PTP4A3O75365 173 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 STAMBPO95630 424 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 ZNF26P17031 533 aaPredicted RBP12.96□□□□□ -0.33
USP39-217ENST00000491659 IFNGR2P38484 337 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 ALDH3B1P43353 468 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 GDI2P50395 445 aaKnown RBP12.96□□□□□ -0.33
USP39-217ENST00000491659 RPS6KA3P51812 740 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 UCP2P55851 309 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 KLF3P57682 345 aaPredicted RBP12.96□□□□□ -0.33
USP39-217ENST00000491659 MAD2L1BPQ15013 274 aaPredicted RBP12.96□□□□□ -0.33
USP39-217ENST00000491659 IQCCQ4KMZ1 466 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 MTX3Q5HYI7 312 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 C6orf52Q5T4I8 152 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 UNQ6126/PRO20091Q6UXV3 157 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 ADCK1Q86TW2 530 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 ARHGAP24Q8N264 748 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 AKR7LQ8NHP1 331 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 SYNPRQ8TBG9 265 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 UBASH3BQ8TF42 649 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 C11orf40Q8WZ69 217 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 NSL1Q96IY1 281 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 FOXN4Q96NZ1 517 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 FUZQ9BT04 418 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 OR2H1Q9GZK4 316 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 BPESC1Q9GZL8 116 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 NRIP3Q9NQ35 241 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 POLE4Q9NR33 117 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 MYEF2Q9P2K5 600 aaKnown RBP12.96□□□□□ -0.33
USP39-217ENST00000491659 EIF3KQ9UBQ5 218 aaKnown RBP12.96□□□□□ -0.33
USP39-217ENST00000491659 IL20RAQ9UHF4 553 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 TIMM10BQ9Y5J6 103 aa12.96□□□□□ -0.33
USP39-217ENST00000491659 ABCA1O95477 2261 aa12.96□□□□□ -0.34
USP39-217ENST00000491659 C5orf49A4QMS7 147 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 C12orf71A8MTZ7 269 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 SOCS2O14508 198 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 CRLF1O75462 422 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 IGFBP1P08833 259 aaPredicted RBP12.95□□□□□ -0.34
USP39-217ENST00000491659 APEHP13798 732 aaKnown RBP12.95□□□□□ -0.34
USP39-217ENST00000491659 ZNF16P17020 682 aaPredicted RBP12.95□□□□□ -0.34
USP39-217ENST00000491659 CALB2P22676 271 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 RRM2P31350 389 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 GZMKP49863 264 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 ERVS71-1P61550 626 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 PSG4Q00888 419 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 CYB5R2Q6BCY4 276 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 SMARCD3Q6STE5 483 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 CYP2R1Q6VVX0 501 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 THSD4Q6ZMP0 1018 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 DPY19L2P2Q6ZN68 376 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 SYT9Q86SS6 491 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 ZDHHC21Q8IVQ6 265 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 ZNF786Q8N393 782 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 OR1J1Q8NGS3 322 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 WACQ9BTA9 647 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 ZNF416Q9BWM5 594 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms