RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 RFPL4BQ6ZWI9 263 aa13.54□□□□□ -0.24
USP48-210ENST00000489108 LINC01006Q8NI28 216 aa13.54□□□□□ -0.24
USP48-210ENST00000489108 ITCHQ96J02 903 aa13.54□□□□□ -0.24
USP48-210ENST00000489108 SLC30A2Q9BRI3 323 aa13.54□□□□□ -0.24
USP48-210ENST00000489108 KCNN2Q9H2S1 579 aa13.54□□□□□ -0.24
USP48-210ENST00000489108 WDR55Q9H6Y2 383 aaPredicted RBP13.54□□□□□ -0.24
USP48-210ENST00000489108 CCNB1IP1Q9NPC3 277 aa13.54□□□□□ -0.24
USP48-210ENST00000489108 NOX4Q9NPH5 578 aa13.54□□□□□ -0.24
USP48-210ENST00000489108 HAO1Q9UJM8 370 aa13.54□□□□□ -0.24
USP48-210ENST00000489108 CLIC1O00299 241 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 TIMM8AO60220 97 aaPredicted RBP13.53□□□□□ -0.24
USP48-210ENST00000489108 MGRN1O60291 552 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 SLC22A3O75751 556 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 CLPXO76031 633 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 IGHG1P01857 330 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 BMP2P12643 396 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 CDAP32320 146 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 PSG7Q13046 419 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 PDCD1Q15116 288 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 ZNF74Q16587 644 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 ZMAT1Q5H9K5 638 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 C6orf10Q5SRN2 563 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 ZNF774Q6NX45 483 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 LINC00114Q6XXX2 140 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 OR2Z1Q8NG97 314 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 NFKBIDQ8NI38 313 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 ITLN1Q8WWA0 313 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 DACT3Q96B18 629 aaPredicted RBP13.53□□□□□ -0.24
USP48-210ENST00000489108 RMND5AQ9H871 391 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 SIAEQ9HAT2 523 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 TCF7L1Q9HCS4 588 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 PPP1R3CQ9UQK1 317 aa13.53□□□□□ -0.24
USP48-210ENST00000489108 KIR2DS1A0A191URI9 304 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 TMEM178BH3BS89 294 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 PRB2P02812 416 aaPredicted RBP13.52□□□□□ -0.25
USP48-210ENST00000489108 MELTFP08582 738 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 THRBP10828 461 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 TNFRSF1AP19438 455 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 TNFSF4P23510 183 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 EPHA3P29320 983 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 PROK1P58294 105 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 PSG4Q00888 419 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 BEAN1Q3B7T3 259 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 ZNF620Q6ZNG0 422 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 Q6ZPA2 131 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 Q6ZR03 302 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 C1orf174Q8IYL3 243 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 MUC20Q8N307 709 aaPredicted RBP13.52□□□□□ -0.25
USP48-210ENST00000489108 EIF1ADQ8N9N8 165 aaKnown RBP13.52□□□□□ -0.25
USP48-210ENST00000489108 THOC1Q96FV9 657 aaKnown RBP13.52□□□□□ -0.25
USP48-210ENST00000489108 MRPL13Q9BYD1 178 aaKnown RBP13.52□□□□□ -0.25
USP48-210ENST00000489108 NANSQ9NR45 359 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 ASH2LQ9UBL3 628 aa13.52□□□□□ -0.25
USP48-210ENST00000489108 G3V4G9 280 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 H3BSA7 217 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 BIRC5O15392 142 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 ERLIN1O75477 346 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 ZNF205O95201 554 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 RPS2P15880 293 aaKnown RBP13.51□□□□□ -0.25
USP48-210ENST00000489108 BGNP21810 368 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 GNB2P62879 340 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 ERVK-25P63136 954 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 FADDQ13158 208 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 SGCAQ16586 387 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 SWT1Q5T5J6 900 aaKnown RBP13.51□□□□□ -0.25
USP48-210ENST00000489108 HHATQ5VTY9 493 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 RUSC1-AS1Q66K80 236 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 KRT73Q86Y46 540 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 KLBQ86Z14 1044 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 TMEM86BQ8N661 226 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 NABP1Q96AH0 204 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 FAM71F1Q96KD3 344 aaPredicted RBP13.51□□□□□ -0.25
USP48-210ENST00000489108 SPATA5L1Q9BVQ7 753 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 PAIP1Q9H074 479 aaKnown RBP13.51□□□□□ -0.25
USP48-210ENST00000489108 RAD21L1Q9H4I0 556 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 TMEM165Q9HC07 324 aa13.51□□□□□ -0.25
USP48-210ENST00000489108 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.51□□□□□ -0.25
USP48-210ENST00000489108 TRMUO75648 421 aaKnown RBP13.5□□□□□ -0.25
USP48-210ENST00000489108 SLC2A10O95528 541 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 HIST1H2ABP04908 130 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 ZNF133P52736 654 aaPredicted RBP13.5□□□□□ -0.25
USP48-210ENST00000489108 BPIFB3P59826 476 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 FGF12P61328 243 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 MRPS34P82930 218 aaKnown RBP13.5□□□□□ -0.25
USP48-210ENST00000489108 CDK6Q00534 326 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 STX3Q13277 289 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 C10orf128Q5T292 105 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 GPR157Q5UAW9 335 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 REEP3Q6NUK4 255 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 HIST3H2AQ7L7L0 130 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 ZER1Q7Z7L7 766 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 KIRREL3Q8IZU9 778 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 C10orf111Q8N326 155 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 NOXO1Q8NFA2 376 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 GTF2H4Q92759 462 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 HIST1H2ACQ93077 130 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 C4orf45Q96LM5 186 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 SEPHS2Q99611 448 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 MCHR1Q99705 422 aa13.5□□□□□ -0.25
USP48-210ENST00000489108 NUDT16L1Q9BRJ7 211 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms