RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PHIPQ8WWQ0 1821 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 GSAPA4D1B5 854 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 FABP12A6NFH5 140 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 KLLNB2CW77 178 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 TEX46H3BTG2 121 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 I3L521 148 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 KCNK1O00180 336 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 WRBO00258 174 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 SLC28A1O00337 649 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 NME4O00746 187 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 MYL12BO14950 172 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 GATCO43716 136 aaKnown RBP4.45□□□□□ -1.7
USP40-213ENST00000483216 TPST1O60507 370 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 RAD1O60671 282 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 SRPX2O60687 465 aaPredicted RBP4.45□□□□□ -1.7
USP40-213ENST00000483216 PSIP1O75475 530 aaKnown RBP4.45□□□□□ -1.7
USP40-213ENST00000483216 STBD1O95210 358 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 LDOC1O95751 146 aaPredicted RBP4.45□□□□□ -1.7
USP40-213ENST00000483216 PAHP00439 452 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 S100A8P05109 93 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 CHRNGP07510 517 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 FCGR3AP08637 254 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 SLC35E2BP0CK96 405 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 DNAH10OSP0CZ25 163 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 PIPP12273 146 aaPredicted RBP4.45□□□□□ -1.7
USP40-213ENST00000483216 ANXA3P12429 323 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 ZNF30P17039 623 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 MYL12AP19105 171 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 TNNI3P19429 210 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 OGNP20774 298 aaKnown RBP4.45□□□□□ -1.7
USP40-213ENST00000483216 ZP3P21754 424 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 GALP22466 123 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 ELK4P28324 431 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 GRIA1P42261 906 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 GMFBP60983 142 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 VBP1P61758 197 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 NAAAQ02083 359 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 CD47Q08722 323 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 STX4Q12846 297 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 P2RY14Q15391 338 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 IMPG1Q17R60 797 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 KCTD19Q17RG1 926 aaPredicted RBP4.45□□□□□ -1.7
USP40-213ENST00000483216 LRRC26Q2I0M4 334 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 ANKRD55Q3KP44 614 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 SLC25A52Q3SY17 297 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 CLVS2Q5SYC1 327 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 PRAMEF8Q5VWM4 474 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 OLFML2AQ68BL7 652 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 ZNF600Q6ZNG1 722 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 LHFPL3Q86UP9 236 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 RALGPS2Q86X27 583 aaPredicted RBP4.45□□□□□ -1.7
USP40-213ENST00000483216 CADM2Q8N3J6 435 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 LINC00471Q8N535 108 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 TTC29Q8NA56 475 aaPredicted RBP4.45□□□□□ -1.7
USP40-213ENST00000483216 OR4F5Q8NH21 305 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 CLHC1Q8NHS4 586 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 UBTD2Q8WUN7 234 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 SLC13A3Q8WWT9 602 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 FAM46BQ96A09 425 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 NTAN1Q96AB6 310 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 PYURFQ96I23 114 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 C12orf42Q96LP6 360 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 CSPG4P5Q96PW8 444 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 TAAR1Q96RJ0 339 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 MAPKAP1Q9BPZ7 522 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 MED18Q9BUE0 208 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 NFKBIZQ9BYH8 718 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 ZNF436Q9C0F3 470 aaPredicted RBP4.45□□□□□ -1.7
USP40-213ENST00000483216 DNTTIP1Q9H147 329 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 AMBNQ9NP70 447 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 ISYNA1Q9NPH2 558 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 PXMP2Q9NR77 195 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 CLN6Q9NWW5 311 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 IMPAD1Q9NX62 359 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 TAS2R13Q9NYV9 303 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 IL37Q9NZH6 218 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 OPTCQ9UBM4 332 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 HMGXB4Q9UGU5 601 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 MOSPD1Q9UJG1 213 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 VSIG4Q9Y279 399 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 POFUT2Q9Y2G5 429 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 PRELID3BQ9Y3B1 194 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 WDR90Q96KV7 1748 aa4.45□□□□□ -1.7
USP40-213ENST00000483216 SSC5DA1L4H1 1573 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 RLFQ13129 1914 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 COL11A1P12107 1806 aaPredicted RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 TRAPPC13A5PLN9 417 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 FAM220BPB1ANY3 271 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 E5RI56 91 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 CACNB4O00305 520 aaPredicted RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 ABCD4O14678 606 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 CHST10O43529 356 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 NDUFA2O43678 99 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 GMDSO60547 372 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 SEC22BO75396 215 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 REM1O75628 298 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 SC5DO75845 299 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 KCNK2O95069 426 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 SNAPINO95295 136 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 IFNA4P05014 189 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms