RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PMPCAQ10713 525 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 PLA2G7Q13093 441 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 NSDHLQ15738 373 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 TMEM184AQ6ZMB5 413 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 GDF15Q99988 308 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 USB1Q9BQ65 265 aaKnown RBP12.33□□□□□ -0.44
USP42-206ENST00000479544 CNTNAP3Q9BZ76 1288 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 PCDHGA5Q9Y5G8 931 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 HCFC2Q9Y5Z7 792 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 CENPFP49454 3210 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 H0Y8X5 98 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 ZNF44P15621 663 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 PSMB6P28072 239 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 SFTPDP35247 375 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 IDH3GP51553 393 aaPredicted RBP12.32□□□□□ -0.44
USP42-206ENST00000479544 CLRN1P58418 232 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 EEF1A2Q05639 463 aaKnown RBP12.32□□□□□ -0.44
USP42-206ENST00000479544 C4orf17Q53FE4 359 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 DND1Q8IYX4 353 aaKnown RBP12.32□□□□□ -0.44
USP42-206ENST00000479544 CCL4L1Q8NHW4 92 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 AKR1E2Q96JD6 320 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 WDR76Q9H967 626 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 ASH2LQ9UBL3 628 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 IMPA2O14732 288 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 NXPH3O95157 252 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 GLULP15104 373 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 GLP1RP43220 463 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 EMDP50402 254 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 PCBP4P57723 403 aaKnown RBP12.32□□□□□ -0.44
USP42-206ENST00000479544 SOHLH1Q5JUK2 328 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 ZNF547Q8IVP9 402 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 SGPP2Q8IWX5 399 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 BADQ92934 168 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 HHIPQ96QV1 700 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 ICE1Q9Y2F5 2266 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 FABP1P07148 127 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 SDHAP31040 664 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 RAB13P51153 203 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 POU3F1Q03052 451 aaPredicted RBP12.32□□□□□ -0.44
USP42-206ENST00000479544 TLE3Q04726 772 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 ATRAIDQ6UW56 229 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 DPY19L2P2Q6ZN68 376 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 CPEB2Q7Z5Q1 589 aaKnown RBP12.32□□□□□ -0.44
USP42-206ENST00000479544 BATF2Q8N1L9 274 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 OR4D10Q8NGI6 311 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 OR10AC1Q8NH08 325 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 MAFAQ8NHW3 353 aaPredicted RBP12.32□□□□□ -0.44
USP42-206ENST00000479544 SDHAF3Q9NRP4 125 aa12.32□□□□□ -0.44
USP42-206ENST00000479544 UBE2J1Q9Y385 318 aaPredicted RBP12.32□□□□□ -0.44
USP42-206ENST00000479544 SF3B6Q9Y3B4 125 aaKnown RBP12.32□□□□□ -0.44
USP42-206ENST00000479544 OR2F2O95006 317 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 S100GP29377 79 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 ZNF85Q03923 595 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 DUSP2Q05923 314 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 OR2F1Q13607 317 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 GLRX5Q86SX6 157 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 OR2G2Q8NGZ5 317 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 SSX3Q99909 188 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 FGF22Q9HCT0 170 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 DAPP1Q9UN19 280 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 ETV7Q9Y603 341 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 PSME4Q14997 1843 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 PRAMEF27A3QJZ7 478 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 OR6C68A6NDL8 312 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 HRH1P35367 487 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 OR1D4P47884 311 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 DHRS2Q13268 280 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 C9orf152Q5JTZ5 239 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 ANGPTL5Q86XS5 388 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 LINC01555Q8NAE3 123 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 SLX1AQ9BQ83 275 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 LDAHQ9H6V9 325 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.31□□□□□ -0.446e-7■■■□□ 14.8
USP42-206ENST00000479544 PLEKHJ1Q9NW61 149 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 MRPL22Q9NWU5 206 aaKnown RBP12.31□□□□□ -0.44
USP42-206ENST00000479544 FOXJ3Q9UPW0 622 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 TRAV1-2A0A0B4J238 106 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 SERINC4A6NH21 518 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 METTL12A8MUP2 240 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 ICAM2P13598 275 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 EPHA1P21709 976 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 MEOX2P50222 304 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 ARF1P84077 181 aaKnown RBP12.31□□□□□ -0.44
USP42-206ENST00000479544 SRSF5Q13243 272 aaKnown RBP12.31□□□□□ -0.44
USP42-206ENST00000479544 ELOCQ15369 112 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 TMEM215Q68D42 235 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 Q6ZRG5 221 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 FJX1Q86VR8 437 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 TMEM151BQ8IW70 566 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 SULF2Q8IWU5 870 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 MFSD9Q8NBP5 474 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 FAM71CQ8NEG0 241 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 OR11G2Q8NGC1 345 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 OR5M9Q8NGP3 310 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 ARL5BQ96KC2 179 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 EMC6Q9BV81 110 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 TAF9BQ9HBM6 251 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 SPTBN2O15020 2390 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 HSPA12AO43301 675 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 SIGLEC6O43699 453 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms