RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TMEM219Q86XT9 240 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 TMEM139Q8IV31 216 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 PDIK1LQ8N165 341 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 DYNAPQ8N1N2 210 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 ARFGAP2Q8N6H7 521 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 PNLDC1Q8NA58 520 aaKnown RBP3.83□□□□□ -1.8
USP4-209ENST00000475873 LY6G5BQ8NDX9 201 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 OR4K5Q8NGD3 323 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 OR10AD1Q8NGE0 317 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 OR5AK3PQ8NH89 298 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 PSMA8Q8TAA3 256 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 VANGL1Q8TAA9 524 aaPredicted RBP3.83□□□□□ -1.8
USP4-209ENST00000475873 NPRL2Q8WTW4 380 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 GIMAP1Q8WWP7 306 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 SLC25A36Q96CQ1 311 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 TUBGCP3Q96CW5 907 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 MS4A14Q96JA4 679 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 LRR1Q96L50 414 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 DUX3Q96PT4 197 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 NABP2Q9BQ15 211 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 TAPBPLQ9BX59 468 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 C1QTNF3Q9BXJ4 246 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 ASPNQ9BXN1 380 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 ULBP2Q9BZM5 246 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 ZMAT4Q9H898 229 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 RNF121Q9H920 327 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 TNFRSF12AQ9NP84 129 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 TMEM38BQ9NVV0 291 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 MKS1Q9NXB0 559 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 NSMCE4AQ9NXX6 385 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 MRPL15Q9P015 296 aaKnown RBP3.83□□□□□ -1.8
USP4-209ENST00000475873 CGGBP1Q9UFW8 167 aaPredicted RBP3.83□□□□□ -1.8
USP4-209ENST00000475873 TBK1Q9UHD2 729 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 BAIAP2L1Q9UHR4 511 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 SLC35A3Q9Y2D2 325 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 CAB39Q9Y376 341 aaPredicted RBP3.83□□□□□ -1.8
USP4-209ENST00000475873 RRP15Q9Y3B9 282 aaKnown RBP3.83□□□□□ -1.8
USP4-209ENST00000475873 N6AMT1Q9Y5N5 214 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 KPTNQ9Y664 436 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 LOC102725191A0A1B0GVB3 256 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 A6NDX4 124 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 A8MT66 165 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 A8MVM7 634 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 MLNRO43193 412 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 ICMTO60725 284 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 GLRA3O75311 464 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 KLHL2O95198 593 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 KRT6AP02538 564 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 KRT6BP04259 564 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 GKN3PP0CG01 181 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 PRG2P13727 222 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 SDC1P18827 310 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 CRABP2P29373 138 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 VDAC2P45880 294 aaPredicted RBP3.82□□□□□ -1.8
USP4-209ENST00000475873 RPS5P46782 204 aaKnown RBP3.82□□□□□ -1.8
USP4-209ENST00000475873 KRT6CP48668 564 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 NPY4RP50391 375 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 RAB13P51153 203 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 MAP2K6P52564 334 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 CLCQ05315 142 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 PDIA2Q13087 525 aaKnown RBP3.82□□□□□ -1.8
USP4-209ENST00000475873 C1DQ13901 141 aaKnown RBP3.82□□□□□ -1.8
USP4-209ENST00000475873 CNN3Q15417 329 aaKnown RBP3.82□□□□□ -1.8
USP4-209ENST00000475873 FAM83EQ2M2I3 478 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 ZNF181Q2M3W8 571 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 UNC50Q53HI1 259 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 PABPC1L2AQ5JQF8 200 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 SPDYAQ5MJ70 313 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 SWT1Q5T5J6 900 aaKnown RBP3.82□□□□□ -1.8
USP4-209ENST00000475873 CD276Q5ZPR3 534 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 C8orf86Q6ZUL3 223 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 MIER2Q8N344 545 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 MFSD8Q8NHS3 518 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 ZFP28Q8NHY6 868 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 ABHD4Q8TB40 342 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 METTL6Q8TCB7 284 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 GRK7Q8WTQ7 553 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 TAAR8Q969N4 342 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 PPCDCQ96CD2 204 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 FCRL1Q96LA6 429 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 TEX37Q96LM6 180 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 TSSK3Q96PN8 268 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 ZNF607Q96SK3 696 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 ZNF382Q96SR6 550 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 MCRIP2Q9BUT9 160 aaKnown RBP3.82□□□□□ -1.8
USP4-209ENST00000475873 SLC19A3Q9BZV2 496 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 REEP4Q9H6H4 257 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 RLIMQ9NVW2 624 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 SH3BP4Q9P0V3 963 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 KIAA1456Q9P272 454 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 ONECUT1Q9UBC0 465 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 KCNG2Q9UJ96 466 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 NFU1Q9UMS0 254 aa3.82□□□□□ -1.8
USP4-209ENST00000475873 FAF1Q9UNN5 650 aaPredicted RBP3.82□□□□□ -1.8
USP4-209ENST00000475873 ZNF256Q9Y2P7 627 aaPredicted RBP3.82□□□□□ -1.8
USP4-209ENST00000475873 IGKV1D-42A0A075B6H8 117 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 TRBV23-1A0A0A0MS06 115 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 C5orf49A4QMS7 147 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 F5H5P2 479 aa3.81□□□□□ -1.8
USP4-209ENST00000475873 H3BSA7 217 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms