RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ZNF596Q8TC21 504 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 SLC38A4Q969I6 547 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 DUS3LQ96G46 650 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 PANX1Q96RD7 426 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 PLA2G2FQ9BZM2 168 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 IFI27L2Q9H2X8 130 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 NEK6Q9HC98 313 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 KCNJ16Q9NPI9 418 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 RAB20Q9NX57 234 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 PSG11Q9UQ72 335 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 GOLT1BQ9Y3E0 138 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 CAMTA1Q9Y6Y1 1673 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 NINLQ9Y2I6 1382 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 IGLV4-69A0A075B6H9 119 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 GLYATL1P3A0A0U1RQE8 302 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 H0YHG0 523 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 SGK1O00141 431 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 DNALI1O14645 258 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 EIF3HO15372 352 aaKnown RBP eCLIP1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 SNAI2O43623 268 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 DPM1O60762 260 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 SRP72O76094 671 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 H6PDO95479 791 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 KRT14P02533 472 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 SERPINA5P05154 406 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 UBE2AP49459 152 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 MXD1Q05195 221 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 PRPSAP1Q14558 356 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 PPM1LQ5SGD2 360 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 C9orf135Q5VTT2 229 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 ANKRD22Q5VYY1 191 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 REEP3Q6NUK4 255 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 TEX43Q6ZNM6 134 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 NCCRP1Q6ZVX7 275 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 ABHD13Q7L211 337 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 HDDC2Q7Z4H3 204 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 OAFQ86UD1 273 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 PCP2Q8IVA1 136 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 C12orf56Q8IXR9 622 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 PRELID2Q8N945 189 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 OR4C5Q8NGB2 326 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 OR4A4PQ8NGN8 299 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 OR5B3Q8NH48 314 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 LKAAEAR1Q8TD35 194 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 FAM3DQ96BQ1 224 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 TSNARE1Q96NA8 513 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 SERPINB12Q96P63 405 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 TGS1Q96RS0 853 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 CHP1Q99653 195 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 C20orf24Q9BUV8 137 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 SLC17A9Q9BYT1 436 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 LINC00597Q9H2U6 94 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 TMEM185BQ9H7F4 350 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 ZNF160Q9HCG1 818 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 SAMSN1Q9NSI8 373 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 UXTQ9UBK9 157 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 ZNF629Q9UEG4 869 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 CD84Q9UIB8 345 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 TBX21Q9UL17 535 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 VANGL2Q9ULK5 521 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 PSG8Q9UQ74 426 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 ST3GAL6Q9Y274 331 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 LRP4O75096 1905 aa1.77□□□□□ -2.13
CCDC88A-212ENST00000474059 MN1Q10571 1320 aaPredicted RBP1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 A0A075B6Q4 140 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 SIRPB1O00241 398 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 ANGPTL7O43827 346 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 RAB3DO95716 219 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 FABP3P05413 133 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 TPM2P07951 284 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 TLX1NBP0CAT3 122 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 PRPS2P11908 318 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 RRM2P31350 389 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 OTX1P32242 354 aaPredicted RBP1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 MAS1LP35410 378 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 GPX4P36969 197 aaPredicted RBP1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 CEACAM6P40199 344 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 CDKN2BP42772 138 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 SLC1A1P43005 524 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 CYB561P49447 251 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 C21orf59P57076 290 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 RGS8P57771 180 aaPredicted RBP1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 RAB10P61026 200 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 RPS15P62841 145 aaKnown RBP1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 ADARB1P78563 741 aaKnown RBP1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 SELENBP1Q13228 472 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 DEFB116Q30KQ4 102 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 HES5Q5TA89 166 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 C22orf42Q6IC83 251 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 OR52W1Q6IF63 320 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 DNAJC24Q6P3W2 148 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 ZFP2Q6ZN57 461 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 SLC16A14Q7RTX9 510 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 IQCKQ8N0W5 287 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 OR10G4Q8NGN3 311 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 OR10J6PQ8NGY7 276 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 OR4S2Q8NH73 311 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 FAM81AQ8TBF8 368 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 CREB3L1Q96BA8 519 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 BMFQ96LC9 184 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms