RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-208	ENST00000470268	HIST1H2AC	Q93077	130 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	RASD2	Q96D21	266 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268		Q96M85	177 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	RDH12	Q96NR8	316 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	TSPAN32	Q96QS1	320 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	TRIB1	Q96RU8	372 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	PITX2	Q99697	317 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	EMC6	Q9BV81	110 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	C8orf4	Q9NR00	106 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	TBC1D23	Q9NUY8	699 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	ERVK-18	Q9QC07	812 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	TINAG	Q9UJW2	476 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	ZNF346	Q9UL40	294 aa	Known RBP	4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	BLOC1S6	Q9UL45	172 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	CLEC4A	Q9UMR7	237 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	ZNF835	Q9Y2P0	537 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	IER3IP1	Q9Y5U9	82 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	FLVCR1	Q9Y5Y0	555 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	KIAA1549	Q9HCM3	1950 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	EPG5	Q9HCE0	2579 aa		4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	PRRC2C	Q9Y520	2896 aa	Known RBP	4.18	□□□□□ -1.74
SF3B1-208	ENST00000470268	TEX13C	A0A0J9YWL9	993 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	LOC102725191	A0A1B0GVB3	256 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	SLC22A20	A6NK97	555 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268		H7C1C5	153 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	SLC1A7	O00341	560 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	DCTN6	O00399	190 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ARPC3	O15145	178 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	PRKY	O43930	277 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	SLC19A2	O60779	497 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	WBP4	O75554	376 aa	Known RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ZNF432	O94892	652 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	INMT	O95050	263 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	OR6A2	O95222	327 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	AMY1A	P04745	511 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	HIST1H1C	P16403	213 aa	Known RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	GABRB1	P18505	474 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	CDH2	P19022	906 aa	Predicted RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	SLC6A6	P31641	620 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	RPL4	P36578	427 aa	Known RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	CDKN2A	P42771	156 aa	Known RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	RPS3A	P61247	264 aa	Known RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	LCN6	P62502	163 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	LGALS3BP	Q08380	585 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	MRPL49	Q13405	166 aa	Known RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ANKDD1A	Q495B1	522 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	KCTD21	Q4G0X4	260 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	MEST	Q5EB52	335 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	PDSS1	Q5T2R2	415 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	DPY19L2P2	Q6ZN68	376 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	CREB3L2	Q70SY1	520 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	SLC35D2	Q76EJ3	337 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	TUSC5	Q8IXB3	177 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	PM20D2	Q8IYS1	436 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ENTHD1	Q8IYW4	607 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	GCNT2	Q8N0V5	402 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	C9orf106	Q8NAJ2	232 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	NAXE	Q8NCW5	288 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ZNF555	Q8NEP9	628 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	OR2T33	Q8NG76	320 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	OR9K2	Q8NGE7	335 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	OR4K13	Q8NH42	304 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ZNF519	Q8TB69	540 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	FAM57A	Q8TBR7	257 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	TEX47	Q8TBZ9	253 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ZNRF4	Q8WWF5	429 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	OXGR1	Q96P68	337 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ERMAP	Q96PL5	475 aa	Predicted RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	GPHA2	Q96T91	129 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	DDO	Q99489	341 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	IFT27	Q9BW83	186 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	HCAR1	Q9BXC0	346 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	POLDIP3	Q9BY77	421 aa	Known RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	SEC61A2	Q9H9S3	476 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	RNF122	Q9H9V4	155 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	SLC25A19	Q9HC21	320 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	INIP	Q9NRY2	104 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	TMEM140	Q9NV12	185 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	PAQR5	Q9NXK6	330 aa	Predicted RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ZNF226	Q9NYT6	803 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	TAS2R16	Q9NYV7	291 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	TVP23B	Q9NYZ1	205 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	RNF6	Q9Y252	685 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	RASD1	Q9Y272	281 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	GPR52	Q9Y2T5	361 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ORC6	Q9Y5N6	252 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	GMPPB	Q9Y5P6	360 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	IGKV3D-15	A0A087WSY6	115 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	IGKV1D-43	A0A0B4J1Z2	117 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	OR6C68	A6NDL8	312 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	FAM183A	A6NL82	134 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	AHRR	A9YTQ3	701 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	SURF4	O15260	269 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	VAMP5	O95183	116 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	TXNDC12	O95881	172 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	IGHM	P01871	453 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	CLU	P10909	449 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	APEH	P13798	732 aa	Known RBP	4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ABO	P16442	354 aa		4.17	□□□□□ -1.74
SF3B1-208	ENST00000470268	ZNF43	P17038	809 aa		4.17	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms