RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SLC25A15Q9Y619 301 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 CADP27708 2225 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 TEX13CA0A0J9YWL9 993 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 SHISA9B4DS77 424 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 H3BNX3 289 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 ABCD4O14678 606 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 DHHO43323 396 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 ENTPD5O75356 428 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 PPP1R3DO95685 299 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 TXNDC12O95881 172 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 QDPRP09417 244 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 ANXA8P13928 327 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 GZMKP49863 264 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 ARF1P84077 181 aaKnown RBP10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 MYBPC1Q00872 1141 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 CD47Q08722 323 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 COX10Q12887 443 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 KRR1Q13601 381 aaKnown RBP10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 TBRG1Q3YBR2 411 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 MESTQ5EB52 335 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 ANKRD16Q6P6B7 361 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 LRFN4Q6PJG9 635 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF627Q7L945 461 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 AMIGO2Q86SJ2 522 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 C3orf56Q8N813 242 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 SYT14Q8NB59 555 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 KBTBD8Q8NFY9 601 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 OR52L1Q8NGH7 329 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 OR52N5Q8NH56 324 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 FNDC8Q8TC99 324 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 MAGEE2Q8TD90 523 aaPredicted RBP10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 BCL2L2Q92843 193 aaPredicted RBP10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 MCHR2Q969V1 340 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 RASD2Q96D21 266 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 NMD3Q96D46 503 aaKnown RBP10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 FOXB1Q99853 325 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 SMURF2Q9HAU4 748 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 SLC17A5Q9NRA2 495 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 TBC1D23Q9NUY8 699 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 FAIMQ9NVQ4 179 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 NPAP1Q9NZP6 1156 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 POFUT2Q9Y2G5 429 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF281Q9Y2X9 895 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 AMDHD2Q9Y303 409 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 IER3IP1Q9Y5U9 82 aa10.34□□□□□ -0.75
SQSTM1-206ENST00000466342 SOCS2O14508 198 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 XKRYO14609 159 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 IMPA2O14732 288 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 ARPC3O15145 178 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 AHCYL1O43865 530 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 SEC14L2O76054 403 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 SOX14O95416 240 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 ZNF23P17027 643 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 PRKACGP22612 351 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 PAX7P23759 505 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 DEFA6Q01524 100 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 FMODQ06828 376 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 HIKESHIQ53FT3 197 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 CLEC12AQ5QGZ9 265 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 THEM4Q5T1C6 240 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 C10orf128Q5T292 105 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 KLHL24Q6TFL4 600 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 ADCK1Q86TW2 530 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 DTX2Q86UW9 622 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 SVOPLQ8N434 492 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 WDR31Q8NA23 367 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 ATG16L2Q8NAA4 619 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 OR8D4Q8NGM9 314 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 DNAJC9Q8WXX5 260 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 CENPNQ96H22 339 aaPredicted RBP10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 ERMAPQ96PL5 475 aaPredicted RBP10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 IFT27Q9BW83 186 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 ZNF556Q9HAH1 456 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 OBP2BQ9NPH6 170 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 TRRAPQ9Y4A5 3859 aa10.33□□□□□ -0.76
SQSTM1-206ENST00000466342 A0A096LPE4 126 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 ARPC4-TTLL3A0A0A6YYG9 625 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 LOC100289279A0A1B0GTE1 492 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 A0A1W2PPZ6 126 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 A0A1W2PR80 420 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 PRSS37A4D1T9 235 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 ERICH4A6NGS2 130 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 G3V2T6 193 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 H7C1C5 153 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 BHLHE40O14503 412 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 IDH3BO43837 385 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC2A10O95528 541 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 WNT11O96014 354 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 HOXB1P14653 301 aaPredicted RBP10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 B4GALT1P15291 398 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 USF1P22415 310 aaPredicted RBP10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 CD40P25942 277 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 NOS3P29474 1203 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 COMPP49747 757 aaPredicted RBP10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 ZNF83P51522 516 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 ZNF84P51523 738 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 CDH11P55287 796 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 UBE2NP61088 152 aaKnown RBP10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 LCN6P62502 163 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 NRN1LQ496H8 165 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms