RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 RAB3CQ96E17 227 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 MRGPRX4Q96LA9 322 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 UBQLN2Q9UHD9 624 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 LCTP09848 1927 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 TNFRSF10AO00220 468 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 DNAJB6O75190 326 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 ALDOBP05062 364 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 AGTR1P30556 359 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 OR10A3P58181 314 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 PPA1Q15181 289 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 ZMYND11Q15326 602 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 SLC22A24Q8N4F4 322 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 FAM71CQ8NEG0 241 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 OR4D11Q8NGI4 311 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 LRRC46Q96FV0 321 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 GDF15Q99988 308 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 FGF20Q9NP95 211 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-205ENST00000439160 MMP25Q9NPA2 562 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 EHFQ9NZC4 300 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 IGKV1-8A0A0C4DH67 115 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 TRAPPC2LH3BP13 241 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 HSPB6O14558 160 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 CDC42EP2O14613 210 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 PRSS23O95084 383 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 ELK1P19419 428 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 MAP2K6P52564 334 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 DUSP2Q05923 314 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 FGL1Q08830 312 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 SPEM2Q0P670 501 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 MEF2DQ14814 521 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 ZXDCQ2QGD7 858 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-205ENST00000439160 XAF1Q6GPH4 301 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 ARSKQ6UWY0 536 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 MEX3BQ6ZN04 569 aaKnown RBP11.16□□□□□ -0.62
TCOF1-205ENST00000439160 ANGPTL5Q86XS5 388 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 DVL3Q92997 716 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-205ENST00000439160 RRNAD1Q96FB5 475 aaKnown RBP11.16□□□□□ -0.62
TCOF1-205ENST00000439160 CMSS1Q9BQ75 279 aaKnown RBP11.16□□□□□ -0.62
TCOF1-205ENST00000439160 METTL9Q9H1A3 318 aa11.16□□□□□ -0.62
TCOF1-205ENST00000439160 B4DXG7 233 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 ZNF814B7Z6K7 855 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 FFAR1O14842 300 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 SGCEO43556 437 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 DPM1O60762 260 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 HOXB9P17482 250 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-205ENST00000439160 FKBP2P26885 142 aaKnown RBP11.15□□□□□ -0.62
TCOF1-205ENST00000439160 EFNA3P52797 238 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 CDK5R1Q15078 307 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 ZNF684Q5T5D7 378 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 Q6ZTK2 550 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 SGPP2Q8IWX5 399 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 OR6V1Q8N148 313 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 SYS1Q8N2H4 156 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 LILRB4Q8NHJ6 448 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 KCNG3Q8TAE7 436 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 OR51E1Q8TCB6 317 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 GIMAP1Q8WWP7 306 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 APH1AQ96BI3 265 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 ANKRD9Q96BM1 317 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-205ENST00000439160 NECAB3Q96P71 396 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-205ENST00000439160 GNRHR2Q96P88 292 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 SPACA5Q96QH8 159 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 STEAP1Q9UHE8 339 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 RGPD3A6NKT7 1758 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-205ENST00000439160 A0A0B4J203 849 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 F5H5P2 479 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 MSR1P21757 451 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 PSG6Q00889 435 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 CTF1Q16619 201 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 THSD4Q6ZMP0 1018 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 IDO2Q6ZQW0 420 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 ZNF679Q8IYX0 411 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 OR6M1Q8NGM8 313 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 PCNPQ8WW12 178 aaKnown RBP11.15□□□□□ -0.62
TCOF1-205ENST00000439160 SMIM19Q96E16 107 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 OR14J1Q9UGF5 321 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 PSME4Q14997 1843 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 FITM1A5D6W6 292 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 HLA-AP01891 365 aaKnown RBP11.15□□□□□ -0.62
TCOF1-205ENST00000439160 GUSBP08236 651 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 CCR6P51684 374 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 LSM11P83369 360 aaKnown RBP eCLIP11.15□□□□□ -0.62
TCOF1-205ENST00000439160 CDK5Q00535 292 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 CD300CQ08708 224 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.15□□□□□ -0.62
TCOF1-205ENST00000439160 SLC22A18ASQ8N1D0 253 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 TMEM52Q8NDY8 209 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 OR56B4Q8NH76 319 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 MUCL1Q96DR8 90 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 HINT2Q9BX68 163 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 FBXL4Q9UKA2 621 aa11.15□□□□□ -0.62
TCOF1-205ENST00000439160 ICE1Q9Y2F5 2266 aa11.15□□□□□ -0.63
TCOF1-205ENST00000439160 C4orf47A7E2U8 309 aa11.15□□□□□ -0.63
TCOF1-205ENST00000439160 CYR61O00622 381 aa11.15□□□□□ -0.63
TCOF1-205ENST00000439160 TNFSF14O43557 240 aa11.15□□□□□ -0.63
TCOF1-205ENST00000439160 SRP9P49458 86 aaKnown RBP11.15□□□□□ -0.63
TCOF1-205ENST00000439160 CSRP3P50461 194 aa11.15□□□□□ -0.63
TCOF1-205ENST00000439160 DMRTC1Q5HYR2 192 aa11.15□□□□□ -0.63
TCOF1-205ENST00000439160 OVCH1Q7RTY7 1134 aa11.15□□□□□ -0.63
TCOF1-205ENST00000439160 ZAR1Q86SH2 424 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms