RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZNF133P52736 654 aaPredicted RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 ARF1P84077 181 aaKnown RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 EFNB1P98172 346 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 SCRN3Q0VDG4 424 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 TAF13Q15543 124 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 ZNF362Q5T0B9 420 aaPredicted RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 SFRP5Q5T4F7 317 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 SLC16A9Q7RTY1 509 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 SLC22A24Q8N4F4 322 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 ZNF454Q8N9F8 522 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 GJC3Q8NFK1 279 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 OR51G2Q8NGK0 314 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 OR6N2Q8NGY6 317 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 UBE2FQ969M7 185 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 ZMYND19Q96E35 227 aaPredicted RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 NGBQ9NPG2 151 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 OBP2BQ9NPH6 170 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 TMEM38BQ9NVV0 291 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 CNOT2Q9NZN8 540 aaKnown RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 NDRG3Q9UGV2 375 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 AMDHD2Q9Y303 409 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 SNX5Q9Y5X3 404 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 KMT2BQ9UMN6 2715 aaPredicted RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 IGLV1-36A0A0B4J1U3 117 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 PTGES3LE9PB15 166 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 E9PQ18 207 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 RAD51DO75771 328 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 LYZL6O75951 148 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 TNFAIP8O95379 198 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 CLDN14O95500 239 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 CGAP01215 116 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 CST2P09228 141 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 CLUP10909 449 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 DBTP11182 482 aaKnown RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 CD79AP11912 226 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 B4GALT1P15291 398 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 NTF4P34130 210 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 AQP6Q13520 282 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 FAM27BQ5VT28 67 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 SLC18B1Q6NT16 456 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 ZNF544Q6NX49 715 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 KCTD18Q6PI47 426 aaPredicted RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 SYT9Q86SS6 491 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 CXorf67Q86X51 503 aaPredicted RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 LRRC18Q8N456 261 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 BBS1Q8NFJ9 593 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 OR10H4Q8NGA5 316 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 OR1K1Q8NGR3 316 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 ASB17Q8WXJ9 295 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 RNASE6Q93091 150 aaKnown RBP8.89□□□□□ -0.99
CD44-207ENST00000425428 DDOQ99489 341 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 YIPF3Q9GZM5 350 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 VCX3AQ9NNX9 186 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 POLE4Q9NR33 117 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 INPP5EQ9NRR6 644 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 PLCXD1Q9NUJ7 323 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 ZFYVE26Q68DK2 2539 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 IQCMA0A1B0GVH7 501 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 DAPL1A0PJW8 107 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 TVP23AA6NH52 213 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 J3QKU1 62 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 ZNF593O00488 134 aaPredicted RBP8.88□□□□□ -0.99
CD44-207ENST00000425428 OR2T7P0C7T2 308 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 GABRB1P18505 474 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 PSMB1P20618 241 aaKnown RBP8.88□□□□□ -0.99
CD44-207ENST00000425428 SLC2A5P22732 501 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 IGHV1-2P23083 117 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 DCKP27707 260 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 CDAP32320 146 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 NAA10P41227 235 aaPredicted RBP8.88□□□□□ -0.99
CD44-207ENST00000425428 SLC15A1P46059 708 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 NUDT6P53370 316 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 ETFDHQ16134 617 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 PHYHD1Q5SRE7 291 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 FAM220AQ7Z4H9 259 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 SLC35F2Q8IXU6 374 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 GABRG1Q8N1C3 465 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 ZNF433Q8N7K0 673 aaPredicted RBP8.88□□□□□ -0.99
CD44-207ENST00000425428 SLC26A10Q8NG04 563 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 OR2T27Q8NH04 317 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 THEM6Q8WUY1 208 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 C11orf40Q8WZ69 217 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 HSD17B8Q92506 261 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 TMEM80Q96HE8 168 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 FOXN4Q96NZ1 517 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 NR1H4Q96RI1 486 aaPredicted RBP8.88□□□□□ -0.99
CD44-207ENST00000425428 KCNS3Q9BQ31 491 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 COPS4Q9BT78 406 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 CCDC90BQ9GZT6 254 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 OR10A4Q9H209 315 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 C1orf198Q9H425 327 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 WDR76Q9H967 626 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 SLC24A3Q9HC58 644 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 AMBNQ9NP70 447 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 TIMM10BQ9Y5J6 103 aa8.88□□□□□ -0.99
CD44-207ENST00000425428 A0A096LPE4 126 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 A0A1W2PPZ6 126 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 SLC1A7O00341 560 aa8.87□□□□□ -0.99
CD44-207ENST00000425428 CASKO14936 926 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms