RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 TNFRSF4P43489 277 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 MAP2K6P52564 334 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 TMEM102Q8N9M5 508 aaPredicted RBP12.87□□□□□ -0.35
COL4A3-202ENST00000396578 NAT6Q93015 286 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 PIGQQ9BRB3 760 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 CABLES2Q9BTV7 478 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 CORINQ9Y5Q5 1042 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 RICTORQ6R327 1708 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 PTGESO14684 152 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 RPA2P15927 270 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 JUNBP17275 347 aaPredicted RBP12.87□□□□□ -0.35
COL4A3-202ENST00000396578 FPR3P25089 353 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 CSNK1DP48730 415 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 DCXRQ7Z4W1 244 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 ZNF596Q8TC21 504 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 HHIPQ96QV1 700 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 UTP23Q9BRU9 249 aaKnown RBP12.87□□□□□ -0.35
COL4A3-202ENST00000396578 LRIT1Q9P2V4 623 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 CLEC2DQ9UHP7 191 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 MBP02144 154 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 CTSAP10619 480 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 ARSAP15289 507 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 CTSCP53634 463 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 RNF212Q495C1 297 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 PTRH1Q86Y79 214 aaKnown RBP12.87□□□□□ -0.35
COL4A3-202ENST00000396578 CALHM2Q9HA72 323 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 A3GALT2U3KPV4 340 aa12.87□□□□□ -0.35
COL4A3-202ENST00000396578 FZD9O00144 591 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 CD14P08571 375 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 PVRP15151 417 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 HOXC13P31276 330 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 C17orf107Q6ZR85 190 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 PARS2Q7L3T8 475 aaKnown RBP12.86□□□□□ -0.35
COL4A3-202ENST00000396578 LRRTM1Q86UE6 522 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 KLF16Q9BXK1 252 aaPredicted RBP12.86□□□□□ -0.35
COL4A3-202ENST00000396578 SCPEP1Q9HB40 452 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 GLAP06280 429 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 BMPR1AP36894 532 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 EPHA5P54756 1037 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 ASAH1Q13510 395 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 ACOT6Q3I5F7 207 aaPredicted RBP12.86□□□□□ -0.35
COL4A3-202ENST00000396578 LINC00299Q6ZSB3 139 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 HTR3DQ70Z44 454 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 CDC20BQ86Y33 519 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 TOE1Q96GM8 510 aaKnown RBP12.86□□□□□ -0.35
COL4A3-202ENST00000396578 ACTR3CQ9C0K3 210 aaPredicted RBP12.86□□□□□ -0.35
COL4A3-202ENST00000396578 CTDSP1Q9GZU7 261 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 TMED7-TICAM2A0A0A6YYA0 188 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 KIR2DS1A0A191URI9 304 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 ZNF727A8MUV8 499 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 LGI1O95970 557 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 CTXN2P0C2S0 81 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 KIR2DS4P43632 304 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 KIR2DS1Q14954 304 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 COX20Q5RI15 118 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 CLEC14AQ86T13 490 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 LRRTM3Q86VH5 581 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 ZFP62Q8NB50 900 aaPredicted RBP12.86□□□□□ -0.35
COL4A3-202ENST00000396578 TMED7Q9Y3B3 224 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 TRIM77I1YAP6 450 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 GCAP28676 217 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 OR10A3P58181 314 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 PXDC1Q5TGL8 231 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 MED25Q71SY5 747 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 ARSGQ96EG1 525 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 USP22Q9UPT9 525 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 ARID1AO14497 2285 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 SYT5O00445 386 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 CCSO14618 274 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 TCAPO15273 167 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 PTBP3O95758 552 aaKnown RBP12.86□□□□□ -0.35
COL4A3-202ENST00000396578 WNT11O96014 354 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 ADRA1AP35348 466 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 DCAF12Q5T6F0 453 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 SCCPDHQ8NBX0 429 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 ZNF775Q96BV0 537 aaPredicted RBP12.86□□□□□ -0.35
COL4A3-202ENST00000396578 LCORQ96JN0 433 aaPredicted RBP12.86□□□□□ -0.35
COL4A3-202ENST00000396578 NIPSNAP1Q9BPW8 284 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 EDDM3AQ14507 147 aa12.86□□□□□ -0.35
COL4A3-202ENST00000396578 BCAT2O15382 392 aaPredicted RBP12.85□□□□□ -0.35
COL4A3-202ENST00000396578 HLA-FP30511 346 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 LYSMD4Q5XG99 296 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 ANKUB1A6NFN9 424 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 RD3LP0DJH9 198 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 GNB1P62873 340 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 Q6ZNX1 250 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 SCD5Q86SK9 330 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 CADM3Q8N126 398 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 SLC39A13Q96H72 371 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 ECM29Q5VYK3 1845 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 LRRC37A3O60309 1634 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 ZNF814B7Z6K7 855 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 TERTO14746 1132 aaKnown RBP12.85□□□□□ -0.35
COL4A3-202ENST00000396578 SOD1P00441 154 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 TGM1P22735 817 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 CD80P33681 288 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 PIGAP37287 484 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 DOC2BQ14184 412 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 RTL8BQ17RB0 113 aa12.85□□□□□ -0.35
COL4A3-202ENST00000396578 ZNF468Q5VIY5 522 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms