RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 WNT2BQ93097 391 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 TAAR8Q969N4 342 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 CPNE4Q96A23 557 aaPredicted RBP9.08□□□□□ -0.96
VPS53-202ENST00000389040 DIRAS2Q96HU8 199 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 Q96M85 177 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 NEURL2Q9BR09 285 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 NDEL1Q9GZM8 345 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 GP6Q9HCN6 339 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 GLRX2Q9NS18 164 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 CAMK2AQ9UQM7 478 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 MEMO1Q9Y316 297 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 TMED7-TICAM2A0A0A6YYA0 188 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 TRGV8A0A0C4DH27 118 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 FABP12A6NFH5 140 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 BOLA2-SMG1P6H3BVE0 249 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 OR2T1O43869 369 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 EIF1BO60739 113 aaKnown RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 TXNDC12O95881 172 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 HIST1H2ABP04908 130 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 CRHP06850 196 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 AZGP1P25311 298 aaKnown RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 SDHAP31040 664 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 CDKN2AP42771 156 aaKnown RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 RPS5P46782 204 aaKnown RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 SLC25A1P53007 311 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 CARD18P57730 90 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 CTXN1P60606 82 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 PPP3R1P63098 170 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 RPL18Q07020 188 aaKnown RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 CDONQ4KMG0 1287 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 TP53I3Q53FA7 332 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 OR2A2Q6IF42 318 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 ZNF585AQ6P3V2 769 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 XKRXQ6PP77 449 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 RPTNQ6XPR3 784 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 TMPPEQ6ZT21 453 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 HIST3H2AQ7L7L0 130 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 GGNQ86UU5 652 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 CADM3Q8N126 398 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 OR2V1Q8NHB1 315 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 ABHD4Q8TB40 342 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 HIST1H2ACQ93077 130 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 ADGRG7Q96K78 797 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 PGLYRP3Q96LB9 341 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 TTTY10Q9BZA0 68 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 FKRPQ9H9S5 495 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 COMMD3Q9UBI1 195 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 MCTS1Q9ULC4 181 aaKnown RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 TMED7Q9Y3B3 224 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 SPENQ96T58 3664 aaKnown RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 ZNF462Q96JM2 2506 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 TRAV36DV7A0A075B6V5 113 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 EFNA2O43921 213 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 SELENOFO60613 162 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 GLCEO94923 617 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 PMS2P2O95744 297 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 APOA1P02647 267 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 F13BP05160 661 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 SPNP16150 400 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 ACVR1BP36896 505 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 MFSD13AQ14CX5 517 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 C3AR1Q16581 482 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 BAK1Q16611 211 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 TMEM176BQ3YBM2 270 aaPredicted RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 ACSF3Q4G176 576 aaPredicted RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 C1orf185Q5T7R7 199 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 RIPPLY2Q5TAB7 128 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 LINC01590Q5TEZ4 76 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 HBMQ6B0K9 141 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 POMZP3Q6PJE2 187 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 GDPD3Q7L5L3 318 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 CEACAM19Q7Z692 300 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 MS4A15Q8N5U1 240 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 SETD6Q8TBK2 473 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 SNX33Q8WV41 574 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 GHSRQ92847 366 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 PELI1Q96FA3 418 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 TSPAN32Q96QS1 320 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 DMRTA2Q96SC8 542 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 TTYH2Q9BSA4 534 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 PPIL3Q9H2H8 161 aaKnown RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 RPRD1BQ9NQG5 326 aaKnown RBP9.07□□□□□ -0.96
VPS53-202ENST00000389040 GRHPRQ9UBQ7 328 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 ST6GALNAC2Q9UJ37 374 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 TBC1D24Q9ULP9 559 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 GRIP1Q9Y3R0 1128 aa9.07□□□□□ -0.96
VPS53-202ENST00000389040 MBD3L4A6NDZ8 208 aaPredicted RBP9.06□□□□□ -0.96
VPS53-202ENST00000389040 MBD3L3A6NE82 208 aaPredicted RBP9.06□□□□□ -0.96
VPS53-202ENST00000389040 MBD3L5A6NJ08 208 aaPredicted RBP9.06□□□□□ -0.96
VPS53-202ENST00000389040 HSPB2A8KAH6 182 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 CCL21O00585 134 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 NPIPB7O75200 414 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 SC5DO75845 299 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 SYNGR4O95473 234 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 BGLAPP02818 100 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 IL7P13232 177 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 STARP49675 285 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 GBX2P52951 348 aaPredicted RBP9.06□□□□□ -0.96
VPS53-202ENST00000389040 CLDN15P56746 228 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 HSF2Q03933 536 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms