RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 OR52N5Q8NH56 324 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 NKX3-1Q99801 234 aaPredicted RBP19.55■□□□□ 0.72
SHMT1-202ENST00000352886 SEC22CQ9BRL7 303 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 MED11Q9P086 117 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 IGLV3-12A0A075B6K2 115 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 GGT3PA6NGU5 568 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 TPPPO94811 219 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 DNASE1P24855 282 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 RAD52P43351 418 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 FMODQ06828 376 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 NKAIN1Q4KMZ8 207 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 RABEPKQ7Z6M1 372 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 PLPP7Q8NBV4 271 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 ST8SIA1Q92185 356 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 OR6C1Q96RD1 312 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 METTL17Q9H7H0 456 aaPredicted RBP19.55■□□□□ 0.72
SHMT1-202ENST00000352886 WNT16Q9UBV4 365 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 SCP2D1Q9UJQ7 156 aa19.55■□□□□ 0.72
SHMT1-202ENST00000352886 RBBP9O75884 186 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 IFNGR1P15260 489 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 ARRB1P49407 418 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-202ENST00000352886 RAB11BQ15907 218 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 PCGF3Q3KNV8 242 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 ARSKQ6UWY0 536 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 CATSPERDQ86XM0 798 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 ASB5Q8WWX0 329 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 PCDHGA5Q9Y5G8 931 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 NPTNQ9Y639 398 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 CACNA1EQ15878 2313 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 NPIPA5E9PKD4 350 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 C2orf76Q3KRA6 126 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 ZBTB37Q5TC79 503 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 TMEM225Q6GV28 225 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 SEZ6L2Q6UXD5 910 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 BIVMQ86UB2 503 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 ZNF454Q8N9F8 522 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 ASB10Q8WXI3 467 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 FAM3DQ96BQ1 224 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 IRF2BPLQ9H1B7 796 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 DIABLOQ9NR28 239 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 NPIPA1Q9UND3 350 aa19.54■□□□□ 0.72
SHMT1-202ENST00000352886 TNFSF12-TNFSF13A0A0A6YY99 330 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 H7C417 338 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 SLC17A2O00624 439 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 KDM4BO94953 1096 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 ANXA7P20073 488 aaKnown RBP19.53■□□□□ 0.72
SHMT1-202ENST00000352886 PER3P56645 1201 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 GLDNQ6ZMI3 551 aaPredicted RBP19.53■□□□□ 0.72
SHMT1-202ENST00000352886 WDFY1Q8IWB7 410 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 OR2T35Q8NGX2 323 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 MTFP1Q9UDX5 166 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 FBXL3Q9UKT7 428 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 RALGAPA1Q6GYQ0 2036 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 TRBV11-1A0A0K0K1C0 115 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 CPED1A4D0V7 1026 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 A6NIZ1 184 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 TOX3O15405 576 aaPredicted RBP19.53■□□□□ 0.72
SHMT1-202ENST00000352886 ICMTO60725 284 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 ALOX12BO75342 701 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 TOXO94900 526 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 NDUFB6O95139 128 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 RAP1BP61224 184 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 RAP1AP62834 184 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 ACY1Q03154 408 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 PAPD4Q6PIY7 484 aaKnown RBP19.53■□□□□ 0.72
SHMT1-202ENST00000352886 H1FNTQ75WM6 255 aaPredicted RBP19.53■□□□□ 0.72
SHMT1-202ENST00000352886 NLRC3Q7RTR2 1065 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 SLC26A10Q8NG04 563 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 MFSD8Q8NHS3 518 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 NUBPLQ8TB37 319 aa19.53■□□□□ 0.72
SHMT1-202ENST00000352886 NPDC1Q9NQX5 325 aaPredicted RBP19.53■□□□□ 0.72
SHMT1-202ENST00000352886 LOC100289279A0A1B0GTE1 492 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 K7ESF4 209 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 DOK2O60496 412 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 CD2P06729 351 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 ZNF823P16415 610 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 APOBEC1P41238 236 aaKnown RBP19.52■□□□□ 0.72
SHMT1-202ENST00000352886 CXCL12P48061 93 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 POU3F1Q03052 451 aaPredicted RBP19.52■□□□□ 0.72
SHMT1-202ENST00000352886 FOXF1Q12946 379 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 OR1J4Q8NGS1 313 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 OR6S1Q8NH40 331 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 CITED4Q96RK1 184 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 MED29Q9NX70 200 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 TAS2R4Q9NYW5 299 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 CKLFQ9UBR5 152 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 EMC9Q9Y3B6 208 aa19.52■□□□□ 0.72
SHMT1-202ENST00000352886 TRAV18A0A075B6X5 111 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 TMEM200CA6NKL6 621 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 SCRG1O75711 98 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 TPOP07202 933 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 DAP3P51398 398 aaKnown RBP19.52■□□□□ 0.71
SHMT1-202ENST00000352886 GUCA2AQ02747 115 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 TLE3Q04726 772 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 ZP4Q12836 540 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 LGALSLQ3ZCW2 172 aaPredicted RBP19.52■□□□□ 0.71
SHMT1-202ENST00000352886 GUSBP11Q6P575 273 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 TEX261Q6UWH6 196 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 DCXRQ7Z4W1 244 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 LINC00346Q8IVM7 164 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms