RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZNF676Q8N7Q3 588 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 PLPP7Q8NBV4 271 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ADAD2Q8NCV1 583 aaKnown RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 OR2L3Q8NG85 312 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ROBO4Q8WZ75 1007 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 DCUN1D4Q92564 292 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 FOXRED1Q96CU9 486 aaPredicted RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 RBM18Q96H35 190 aaKnown RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 ADAD1Q96M93 576 aaKnown RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 CHMP1AQ9HD42 196 aaPredicted RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 DZANK1Q9NVP4 752 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 DNAJB12Q9NXW2 375 aaKnown RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 SCN5AQ14524 2016 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 A0A0A6YYC8 382 aaPredicted RBP6.13□□□□□ -1.43
VPS39-202ENST00000348544 WIPF3A6NGB9 483 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 TVP23AA6NH52 213 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 I3L1I5 382 aaPredicted RBP6.13□□□□□ -1.43
VPS39-202ENST00000348544 ARPC3O15145 178 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CD5P06127 495 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 TACSTD2P09758 323 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CPMP14384 443 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 PSMB6P28072 239 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 ADH6P28332 368 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CD1CP29017 333 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 STARD6P59095 220 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 SKP1P63208 163 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CAP1Q01518 475 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 ELOCQ15369 112 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 RNF212Q495C1 297 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 OTPQ5XKR4 325 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 KCTD9Q7L273 389 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CDC20BQ86Y33 519 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 FAM219AQ8IW50 185 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 OR2L8Q8NGY9 312 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 GPR148Q8TDV2 347 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CASTOR1Q8WTX7 329 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 ISOC2Q96AB3 205 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 SLC41A2Q96JW4 573 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 SMIM8Q96KF7 97 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 AMELYQ99218 206 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 WDR77Q9BQA1 342 aaPredicted RBP6.13□□□□□ -1.43
VPS39-202ENST00000348544 TCEAL7Q9BRU2 100 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 FN3KRPQ9HA64 309 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 DUSP22Q9NRW4 184 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 HCFC1R1Q9NWW0 138 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CACFD1Q9UGQ2 172 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 IKZF2Q9UKS7 526 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 LAMA2P24043 3122 aaKnown RBP6.13□□□□□ -1.43
VPS39-202ENST00000348544 hCG_1809904A0A1W2PP81 198 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 A0A1W2PR64 198 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 A0A1W2PRV1 198 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 POM121BA6NF01 834 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 DBX1A6NMT0 343 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 ZNF729A6NN14 1252 aaPredicted RBP6.13□□□□□ -1.43
VPS39-202ENST00000348544 H7C1C5 153 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 AGPAT2O15120 278 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 GPANK1O95872 356 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CYB5AP00167 134 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 PCCBP05166 539 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 FCGR3AP08637 254 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CT62P0C5K7 136 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 ADRB3P13945 408 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CEBPBP17676 345 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 ACKR3P25106 362 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 GABRA3P34903 492 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 GPX4P36969 197 aaPredicted RBP6.13□□□□□ -1.43
VPS39-202ENST00000348544 MAP3K8P41279 467 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 TSFMP43897 325 aaKnown RBP6.13□□□□□ -1.43
VPS39-202ENST00000348544 ID4P47928 161 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 LCN6P62502 163 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 RPS4XP62701 263 aaKnown RBP6.13□□□□□ -1.43
VPS39-202ENST00000348544 IL13RA1P78552 427 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 RUNX2Q13950 521 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 SLC22A6Q4U2R8 563 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 WDR38Q5JTN6 314 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 TMEM244Q5VVB8 128 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 OR10K2Q6IF99 312 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 CDPF1Q6NVV7 123 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 LRRC69Q6ZNQ3 347 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 MTSS1LQ765P7 747 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 ERN2Q76MJ5 926 aaKnown RBP6.13□□□□□ -1.43
VPS39-202ENST00000348544 ETFBKMTQ8IXQ9 262 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 ZNF561Q8N587 486 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 MFSD9Q8NBP5 474 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 ADAMTS17Q8TE56 1095 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 PPP1R14AQ96A00 147 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 TRIM43Q96BQ3 446 aaPredicted RBP6.13□□□□□ -1.43
VPS39-202ENST00000348544 C3orf49Q96BT1 292 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 TMEM41AQ96HV5 264 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 C4orf45Q96LM5 186 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 MICU1Q9BPX6 476 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 SLC17A5Q9NRA2 495 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 PLA2G2EQ9NZK7 142 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 KCNG2Q9UJ96 466 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 HCFC2Q9Y5Z7 792 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 WNT6Q9Y6F9 365 aa6.13□□□□□ -1.43
VPS39-202ENST00000348544 C13orf42A0A1B0GVH6 325 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 A0A1W2PPH5 198 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 FITM1A5D6W6 292 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 TMEM235A6NFC5 223 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms