RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 DLL4Q9NR61 685 aa13.85□□□□□ -0.19
UPF3B-202ENST00000345865 MED29Q9NX70 200 aa13.85□□□□□ -0.19
UPF3B-202ENST00000345865 PCDHGA5Q9Y5G8 931 aa13.85□□□□□ -0.19
UPF3B-202ENST00000345865 MED12Q93074 2177 aa13.85□□□□□ -0.19
UPF3B-202ENST00000345865 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 TRBV11-1A0A0K0K1C0 115 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 G3V3Q6 166 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 SSNA1O43805 119 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 SRSF10O75494 262 aaKnown RBP13.84□□□□□ -0.19
UPF3B-202ENST00000345865 CTAG2O75638 210 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 CFPP27918 469 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 PTGS2P35354 604 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 ARRB1P49407 418 aaPredicted RBP13.84□□□□□ -0.19
UPF3B-202ENST00000345865 CCL7P80098 99 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 GLO1Q04760 184 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 C19orf57Q0VDD7 668 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 FOXF1Q12946 379 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 FAM69BQ5VUD6 431 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 FAM166AQ6J272 317 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 ANKRD16Q6P6B7 361 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 OR52N5Q8NH56 324 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 AKIRIN1Q9H9L7 192 aaPredicted RBP13.84□□□□□ -0.19
UPF3B-202ENST00000345865 TOX3O15405 576 aaPredicted RBP13.84□□□□□ -0.19
UPF3B-202ENST00000345865 SCRG1O75711 98 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 RAD52P43351 418 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 BLVRAP53004 296 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 AP3S2P59780 193 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 MRPS10P82664 201 aaKnown RBP13.84□□□□□ -0.19
UPF3B-202ENST00000345865 C2orf76Q3KRA6 126 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 BPHLQ86WA6 291 aaPredicted RBP13.84□□□□□ -0.19
UPF3B-202ENST00000345865 LINC00346Q8IVM7 164 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 SLC26A10Q8NG04 563 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 NUBPLQ8TB37 319 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 ST8SIA1Q92185 356 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 HLA-CQ95604 372 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 GPR137Q96N19 417 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 SEC22CQ9BRL7 303 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 RANBP3Q9H6Z4 567 aaPredicted RBP13.84□□□□□ -0.19
UPF3B-202ENST00000345865 NOX3Q9HBY0 568 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 APMAPQ9HDC9 416 aa13.84□□□□□ -0.19
UPF3B-202ENST00000345865 PPIEQ9UNP9 301 aaKnown RBP13.84□□□□□ -0.19
UPF3B-202ENST00000345865 ADAMTS9Q9P2N4 1935 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 CIB4A0PJX0 185 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 NAP1L6A6NFF2 107 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 GGT3PA6NGU5 568 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 TSC22D2O75157 780 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 LDOC1O95751 146 aaPredicted RBP13.83□□□□□ -0.2
UPF3B-202ENST00000345865 FOSL2P15408 326 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 CRABP1P29762 137 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 RIDAP52758 137 aaKnown RBP13.83□□□□□ -0.2
UPF3B-202ENST00000345865 GUCA2AQ02747 115 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 ZP4Q12836 540 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 INPP5JQ15735 1006 aaPredicted RBP13.83□□□□□ -0.2
UPF3B-202ENST00000345865 ZNF385CQ66K41 422 aaPredicted RBP13.83□□□□□ -0.2
UPF3B-202ENST00000345865 TMEM225Q6GV28 225 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 KCTD18Q6PI47 426 aaPredicted RBP13.83□□□□□ -0.2
UPF3B-202ENST00000345865 C5orf46Q6UWT4 87 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 MFSD8Q8NHS3 518 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 KCNK17Q96T54 332 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 NPTNQ9Y639 398 aa13.83□□□□□ -0.2
UPF3B-202ENST00000345865 IGHV5-10-1A0A0J9YXX1 117 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 LOC101059948A0A1B0GTJ6 334 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 H3BML4 177 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 TGM6O95932 706 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 ANXA7P20073 488 aaKnown RBP13.82□□□□□ -0.2
UPF3B-202ENST00000345865 EPHA8P29322 1005 aaPredicted RBP13.82□□□□□ -0.2
UPF3B-202ENST00000345865 MAP2K6P52564 334 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 ACY1Q03154 408 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 H1FNTQ75WM6 255 aaPredicted RBP13.82□□□□□ -0.2
UPF3B-202ENST00000345865 DCXRQ7Z4W1 244 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 ZNF248Q8NDW4 579 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 OR1J4Q8NGS1 313 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 ST7LQ8TDW4 575 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 RNF138Q8WVD3 245 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 FAM3DQ96BQ1 224 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 NPDC1Q9NQX5 325 aaPredicted RBP13.82□□□□□ -0.2
UPF3B-202ENST00000345865 EMC9Q9Y3B6 208 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 PHF3Q92576 2039 aaKnown RBP13.82□□□□□ -0.2
UPF3B-202ENST00000345865 FREM2Q5SZK8 3169 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 H7C417 338 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 SLC17A2O00624 439 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 GDF9O60383 454 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 ICMTO60725 284 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 PTGDSP41222 190 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 APOBEC1P41238 236 aaKnown RBP13.82□□□□□ -0.2
UPF3B-202ENST00000345865 EMP2P54851 167 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 SCAND1P57086 179 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 FOXK1P85037 733 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 POU3F1Q03052 451 aaPredicted RBP13.82□□□□□ -0.2
UPF3B-202ENST00000345865 SQSTM1Q13501 440 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 CSRP2Q16527 193 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 SLC25A25Q6KCM7 469 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 CORO6Q6QEF8 472 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 OR4D10Q8NGI6 311 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 OR51A2Q8NGJ7 313 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 SLC25A28Q96A46 364 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 EMC6Q9BV81 110 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 METTL17Q9H7H0 456 aaPredicted RBP13.82□□□□□ -0.2
UPF3B-202ENST00000345865 HEXA-AS1Q9H8Q6 139 aa13.82□□□□□ -0.2
UPF3B-202ENST00000345865 G6PC2Q9NQR9 355 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms