RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ADAM10O14672 748 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 ZNF254O75437 659 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 IGF2P01344 180 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 CD1AP06126 327 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 KLK2P20151 261 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 BIDP55957 195 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 C17orf67Q0P5P2 114 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 RASGEF1BQ0VAM2 473 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 CAMK2DQ13557 499 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 LYPD8Q6UX82 237 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 Q6ZTK2 550 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 NFAM1Q8NET5 270 aaPredicted RBP9.28□□□□□ -0.92
LIMA1-201ENST00000341247 ZNF431Q8TF32 576 aaPredicted RBP9.28□□□□□ -0.92
LIMA1-201ENST00000341247 PHYHIPQ92561 330 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 HAVCR1Q96D42 359 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIMA1-201ENST00000341247 SEC61A2Q9H9S3 476 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 FBXL2Q9UKC9 423 aa9.28□□□□□ -0.92
LIMA1-201ENST00000341247 OR6C76A6NM76 312 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 OR2T1O43869 369 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 EFNA2O43921 213 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 ZNF780AO75290 641 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 FOSL2P15408 326 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 RAD52P43351 418 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 NDUFA5Q16718 116 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 LINC00303Q3SY05 128 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 PPP1R3BQ86XI6 285 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 KMT5CQ86Y97 462 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 JAGN1Q8N5M9 183 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 OR11G2Q8NGC1 345 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 MIB2Q96AX9 1013 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 WDR77Q9BQA1 342 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 LY6G6EA0A0G2JKS1 128 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 GABARAPH6UMI1 98 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 ZNF28P17035 718 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 PCGF3Q3KNV8 242 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 SLC22A10Q63ZE4 541 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 BTN2A1Q7KYR7 527 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 CPEB2Q7Z5Q1 589 aaKnown RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 BIVMQ86UB2 503 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 OR4D10Q8NGI6 311 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 CDX2Q99626 313 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 SMOC1Q9H4F8 434 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 STEAP1Q9UHE8 339 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 SLC23A1Q9UHI7 598 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 U3KQA8 63 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 AHCTF1Q8WYP5 2266 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 A0A1W2PPL8 197 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 VSTM2BA6NLU5 285 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 FTCDNL1E5RQL4 147 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 P2RY10O00398 339 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 GPR171O14626 319 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 SMAD9O15198 467 aaKnown RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 ALDOBP05062 364 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 S100A1P23297 94 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 ZNF41P51814 821 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 UBE2MP61081 183 aaKnown RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 HSF1Q00613 529 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 C2orf76Q3KRA6 126 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 ASPHD2Q6ICH7 369 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 KCTD18Q6PI47 426 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 TMEM205Q6UW68 189 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 H1FNTQ75WM6 255 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 ZNF627Q7L945 461 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 RABEPKQ7Z6M1 372 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 OR8H1Q8NGG4 311 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 OR52B4Q8NGK2 314 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 SLC25A44Q96H78 314 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 ATG5Q9H1Y0 275 aa9.27□□□□□ -0.93
LIMA1-201ENST00000341247 ELF5Q9UKW6 265 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-201ENST00000341247 ANKUB1A6NFN9 424 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 RLN1P04808 185 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 SLC2A1P11166 492 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 ANXA3P12429 323 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 PSMB1P20618 241 aaKnown RBP9.26□□□□□ -0.93
LIMA1-201ENST00000341247 CDAP32320 146 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 SELENOPP49908 381 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 GALK2Q01415 458 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 OC90Q02509 493 aaPredicted RBP9.26□□□□□ -0.93
LIMA1-201ENST00000341247 GLYATL3Q5SZD4 288 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 LUZP2Q86TE4 346 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.26□□□□□ -0.93
LIMA1-201ENST00000341247 RNF128Q8TEB7 428 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 JSRP1Q96MG2 331 aaPredicted RBP9.26□□□□□ -0.93
LIMA1-201ENST00000341247 OR5B2Q96R09 309 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 GTPBP2Q9BX10 602 aaKnown RBP9.26□□□□□ -0.93
LIMA1-201ENST00000341247 DEFB126Q9BYW3 111 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 NOX3Q9HBY0 568 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 SEMA5BQ9P283 1151 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 ZNF69Q9UC07 566 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 ING4Q9UNL4 249 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 POLR1DQ9Y2S0 133 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 TRBV5-7A0A0A0MS05 114 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 TMEM269A0A1B0GVZ9 245 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 C7orf66A4D0T2 115 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 MEN1O00255 615 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 DNASE1L1P49184 302 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 MYBPHQ13203 477 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 TIGD3Q6B0B8 471 aa9.26□□□□□ -0.93
LIMA1-201ENST00000341247 OR13C3Q8NGS6 347 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms