RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 OR2M3Q8NG83 312 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 OR4C3Q8NH37 302 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 ADAMTS14Q8WXS8 1223 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 PIGMQ9H3S5 423 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 FN3KRPQ9HA64 309 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 ERVK13-1Q9NX77 482 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 Q499Y3 187 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 ARSKQ6UWY0 536 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 EMG1Q92979 244 aaKnown RBP9.16□□□□□ -0.94
USP54-201ENST00000339859 REEP6Q96HR9 211 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 SLC6A7Q99884 636 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 SLC16A6O15403 523 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 IL2RGP31785 369 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 C3orf49Q96BT1 292 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 ISOC1Q96CN7 298 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 GMPPAQ96IJ6 420 aaPredicted RBP9.15□□□□□ -0.94
USP54-201ENST00000339859 SLCO1C1Q9NYB5 712 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 MYEF2Q9P2K5 600 aaKnown RBP9.15□□□□□ -0.94
USP54-201ENST00000339859 SLC5A6Q9Y289 635 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 UBE2J1Q9Y385 318 aaPredicted RBP9.15□□□□□ -0.94
USP54-201ENST00000339859 ZNF83P51522 516 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 GDPD3Q7L5L3 318 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 SLC22A24Q8N4F4 322 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 NPEPL1Q8NDH3 523 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 APOBEC3DQ96AK3 386 aaPredicted RBP9.15□□□□□ -0.94
USP54-201ENST00000339859 TRMT61AQ96FX7 289 aaKnown RBP9.15□□□□□ -0.94
USP54-201ENST00000339859 WACQ9BTA9 647 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 TRAPPC2LQ9UL33 140 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 TRAV18A0A075B6X5 111 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 A0A1B0GUH1 482 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 MASP2O00187 686 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 ZNF780AO75290 641 aaPredicted RBP9.15□□□□□ -0.94
USP54-201ENST00000339859 CNOT4O95628 575 aaKnown RBP9.15□□□□□ -0.94
USP54-201ENST00000339859 ZFP36L2P47974 494 aaKnown RBP9.15□□□□□ -0.94
USP54-201ENST00000339859 NLRC3Q7RTR2 1065 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 OR56B1Q8NGI3 324 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 SYNPRQ8TBG9 265 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 RNF170Q96K19 258 aa9.15□□□□□ -0.94
USP54-201ENST00000339859 MRPS28Q9Y2Q9 187 aaKnown RBP9.15□□□□□ -0.94
USP54-201ENST00000339859 A0A1B0GTH9 108 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 UBBP0CG47 229 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 EIF5AP63241 154 aaKnown RBP9.15□□□□□ -0.95
USP54-201ENST00000339859 ARF1P84077 181 aaKnown RBP9.15□□□□□ -0.95
USP54-201ENST00000339859 TBCEQ15813 527 aaPredicted RBP9.15□□□□□ -0.95
USP54-201ENST00000339859 CNPY1Q3B7I2 92 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 SPERTQ8NA61 448 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 OR51A2Q8NGJ7 313 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 LGALS12Q96DT0 336 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 ALKBH3Q96Q83 286 aaPredicted RBP9.15□□□□□ -0.95
USP54-201ENST00000339859 RHBDD3Q9Y3P4 386 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 TUBAL3A6NHL2 446 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 PMS2P2O95744 297 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 FCER2P06734 321 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 RAB35Q15286 201 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 TGIF1Q15583 401 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 OR52I1Q8NGK6 324 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 HES7Q9BYE0 225 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 SLC26A1Q9H2B4 701 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 RGCCQ9H4X1 137 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 ZNF286AQ9HBT8 521 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 CPNE5Q9HCH3 593 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 TMEM100Q9NV29 134 aa9.15□□□□□ -0.95
USP54-201ENST00000339859 J3QRK9 145 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 RGS11O94810 467 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 TNFRSF1AP19438 455 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 CD40LGP29965 261 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 EIF2B2P49770 351 aaKnown RBP9.14□□□□□ -0.95
USP54-201ENST00000339859 S100A10P60903 97 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 RNASE10Q5GAN6 216 aaKnown RBP9.14□□□□□ -0.95
USP54-201ENST00000339859 AKAP14Q86UN6 197 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 LACC1Q8IV20 430 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 OR56B2PQ8NGI1 322 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 OR1J1Q8NGS3 322 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 OR52N1Q8NH53 320 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 TECTBQ96PL2 329 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 FUZQ9BT04 418 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 IKZF5Q9H5V7 419 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 IFI6P09912 130 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 PRSS3P35030 304 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 PSG6Q00889 435 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 PPA1Q15181 289 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 HEPHL1Q6MZM0 1159 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 Q6ZPB1 254 aaPredicted RBP9.14□□□□□ -0.95
USP54-201ENST00000339859 ZNF573Q86YE8 665 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 ENTHD1Q8IYW4 607 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 OR13C9Q8NGT0 318 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 SLCO4A1Q96BD0 722 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 NRIP3Q9NQ35 241 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 TCRBV5S2A0A599 114 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 OR2M5A3KFT3 312 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 CDK2AP1O14519 115 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 EFSO43281 561 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 GABRA5P31644 462 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 NHSL2Q5HYW2 709 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 PHYHIPQ92561 330 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 FBXO17Q96EF6 278 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 TEAD3Q99594 435 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 KCNJ15Q99712 375 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 ST6GALNAC5Q9BVH7 336 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 GABARAPL3Q9BY60 117 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms