RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ZNF648Q5T619 568 aaPredicted RBP3.8□□□□□ -1.8
NEDD4-201ENST00000338963 AGBL4Q5VU57 503 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 ANKRD34AQ69YU3 496 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 TNFAIP8L2Q6P589 184 aaPredicted RBP3.8□□□□□ -1.8
NEDD4-201ENST00000338963 PODNL1Q6PEZ8 512 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 DHRS11Q6UWP2 260 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 C17orf64Q86WR6 236 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 SUSD6Q92537 303 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 MOAP1Q96BY2 351 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 MVB12AQ96EY5 273 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 ALKBH3Q96Q83 286 aaPredicted RBP3.8□□□□□ -1.8
NEDD4-201ENST00000338963 MYOCQ99972 504 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 POFUT1Q9H488 388 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 GBA2Q9HCG7 927 aaPredicted RBP3.8□□□□□ -1.8
NEDD4-201ENST00000338963 IL17CQ9P0M4 197 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 FLVCR2Q9UPI3 526 aa3.8□□□□□ -1.8
NEDD4-201ENST00000338963 A8MVM7 634 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 J3QR06 171 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 CXCL11O14625 94 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 HCRTR1O43613 425 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 MFSD11O43934 449 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 RHBDL1O75783 438 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ACTL6AO96019 429 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 CTSAP10619 480 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 FGF5P12034 268 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 TACR2P21452 398 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 IL2P60568 153 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 BAXQ07812 192 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 IL24Q13007 206 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 TRA2AQ13595 282 aaKnown RBP eCLIP3.79□□□□□ -1.8
NEDD4-201ENST00000338963 MORN2Q502X0 79 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 REEP3Q6NUK4 255 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 FCRLAQ7L513 359 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 SYT12Q8IV01 421 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 MSRB3Q8IXL7 192 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 GPR119Q8TDV5 335 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 THAP3Q8WTV1 239 aaPredicted RBP3.79□□□□□ -1.8
NEDD4-201ENST00000338963 CRYGNQ8WXF5 182 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 HAS2Q92819 552 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 TMEM186Q96B77 213 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 SPSB1Q96BD6 273 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF607Q96SK3 696 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ATOH8Q96SQ7 321 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 FNDC11Q9BVV2 318 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 NRIP3Q9NQ35 241 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 TDP1Q9NUW8 608 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF346Q9UL40 294 aaKnown RBP3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ARL5CA6NH57 179 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 FTCDNL1E5RQL4 147 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 NME2P1O60361 137 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 DOK2O60496 412 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 SYPP08247 313 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 PRPH2P23942 346 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 F2RP25116 425 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 NDUFV1P49821 464 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 MMP16P51512 607 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 PIGPP57054 158 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 SUMO1P63165 101 aaKnown RBP3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF763Q0D2J5 394 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 HIKESHIQ53FT3 197 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 KCTD9Q7L273 389 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 SELENOHQ8IZQ5 122 aaKnown RBP3.79□□□□□ -1.8
NEDD4-201ENST00000338963 GBGT1Q8N5D6 347 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 CCDC71LQ8N9Z2 235 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 FBXO22Q8NEZ5 403 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 FAM46AQ96IP4 442 aaKnown RBP3.79□□□□□ -1.8
NEDD4-201ENST00000338963 AP1S3Q96PC3 154 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 C1QTNF2Q9BXJ5 285 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 C1orf198Q9H425 327 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 TMEM231Q9H6L2 316 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 SLAMF8Q9P0V8 285 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 SLC13A4Q9UKG4 626 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 DSPPQ9NZW4 1301 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 XKRYO14609 159 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 NDUFS3O75489 264 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ECI2O75521 394 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 TGFB1P01137 390 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 IGHEP01854 428 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 PTHLHP12272 177 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 PGAM2P15259 253 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 HLA-DRB3P79483 266 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF621Q6ZSS3 439 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 MUC20Q8N307 709 aaPredicted RBP3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ARIH2OSQ8N7S6 290 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 OR51Q1Q8NH59 317 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ADAMTS18Q8TE60 1221 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 ABHD3Q8WU67 409 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 DYNLL2Q96FJ2 89 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 DIRC2Q96SL1 478 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 TAF9BQ9HBM6 251 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 TESQ9UGI8 421 aaKnown RBP3.79□□□□□ -1.8
NEDD4-201ENST00000338963 SRPK3Q9UPE1 567 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 MRPS16Q9Y3D3 137 aaKnown RBP3.79□□□□□ -1.8
NEDD4-201ENST00000338963 FAM230AA0A1W2PPH8 454 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 AQP7O14520 342 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 CTSVO60911 334 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 CPSF4O95639 269 aaKnown RBP3.79□□□□□ -1.8
NEDD4-201ENST00000338963 PCCBP05166 539 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 THBS2P35442 1172 aa3.79□□□□□ -1.8
NEDD4-201ENST00000338963 DGKEP52429 567 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms