RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ROGDIQ9GZN7 287 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 ANKRD19PQ9H560 264 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 RANBP3Q9H6Z4 567 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 AUNIPQ9H7T9 357 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 GEMIN7Q9H840 131 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF160Q9HCG1 818 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 BFARQ9NZS9 450 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 GCNT4Q9P109 453 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 PSMC3IPQ9P2W1 217 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 NUFIP1Q9UHK0 495 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 PACSIN2Q9UNF0 486 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 TRAF3IP3Q9Y228 551 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 PALLDQ8WX93 1383 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 KIAA0100Q14667 2235 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 MON2Q7Z3U7 1717 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 IFT172Q9UG01 1749 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 A0A1W2PNU3 283 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 TCRBV9S1A1TA0A576 114 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 SUPT3HB4E1H0 165 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 GOLGA8SH3BPF8 625 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 LSM1O15116 133 aaKnown RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 MBTPS2O43462 519 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 AKR7A2O43488 359 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 TRAF3IP2O43734 574 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 FAM189A1O60320 539 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 CA11O75493 328 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 FTH1P02794 183 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 CT62P0C5K7 136 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 ICAM2P13598 275 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 TNNI1P19237 187 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 TBPP20226 339 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 CD1CP29017 333 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 CDKN1BP46527 198 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 GTF2A1P52655 376 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 CLDN8P56748 225 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 C21orf59P57076 290 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 RGS8P57771 180 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 MERTKQ12866 999 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 DUSP7Q16829 419 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 PIP5KL1Q5T9C9 394 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 IGFL2Q6UWQ7 119 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 ENPP6Q6UWR7 440 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 C6orf89Q6UWU4 347 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 UTS2BQ765I0 119 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 EIF3MQ7L2H7 374 aaKnown RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 CENPQQ7L2Z9 268 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 LUZP2Q86TE4 346 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 COMMD1Q8N668 190 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 OR4C5Q8NGB2 326 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 OR9G1Q8NH87 305 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 CMTM7Q96FZ5 175 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 ITCHQ96J02 903 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 TSNARE1Q96NA8 513 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 SDHCQ99643 169 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 RASL11BQ9BPW5 248 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 NAT9Q9BTE0 207 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 IQCGQ9H095 443 aaKnown RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 NMRAL1Q9HBL8 299 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 NT5MQ9NPB1 228 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 IL26Q9NPH9 171 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 THUMPD1Q9NXG2 353 aaKnown RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 HOXC10Q9NYD6 342 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 KCNIP1Q9NZI2 227 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 IKZF2Q9UKS7 526 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 VANGL2Q9ULK5 521 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 N6AMT1Q9Y5N5 214 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 PEX16Q9Y5Y5 336 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 LRP4O75096 1905 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 RANBP2P49792 3224 aaKnown RBP2.2□□□□□ -2.06
HMGB1-201ENST00000326004 INSRP06213 1382 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 BRCA2P51587 3418 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 BDP1A6H8Y1 2624 aa2.2□□□□□ -2.06
HMGB1-201ENST00000326004 KMT2BQ9UMN6 2715 aaPredicted RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 DICER1Q9UPY3 1922 aaKnown RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF609O15014 1411 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 ANKARQ7Z5J8 1434 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 NSG1A0A0A6YYJ2 146 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 NKX2-6A6NCS4 301 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 GOLGA8TH3BQL2 631 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 DLGAP1O14490 977 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 H6PDO95479 791 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 OXSR1O95747 527 aaPredicted RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 CHTF8P0CG12 524 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 PSG2P11465 335 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 CRISP2P16562 243 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 KITLGP21583 273 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 ATP5C1P36542 298 aaKnown RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 OPRD1P41143 372 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 VDAC2P45880 294 aaPredicted RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 RPS5P46782 204 aaKnown RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 CSNK1EP49674 416 aaKnown RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 ETV1P50549 477 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 CARD18P57730 90 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 MAB21L1Q13394 359 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 OR5I1Q13606 314 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 GPNMBQ14956 572 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 CHRNA6Q15825 494 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF77Q15935 545 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 KLHL40Q2TBA0 621 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 CYB5R2Q6BCY4 276 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms