RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ZNF250P15622 560 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 DRD4P21917 467 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 RPL4P36578 427 aaKnown RBP16.7■□□□□ 0.26
LIME1-201ENST00000309546 GPR4P46093 362 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 CDH15P55291 814 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 LCN6P62502 163 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 THEM4Q5T1C6 240 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 FAM205BPQ63HN1 556 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 LRRC75AQ8NAA5 344 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 KCTD14Q9BQ13 255 aaPredicted RBP16.7■□□□□ 0.26
LIME1-201ENST00000309546 SLCO1C1Q9NYB5 712 aa16.7■□□□□ 0.26
LIME1-201ENST00000309546 IGLV3-9A0A075B6K5 115 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 A0A087WUU8 490 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 C5orf49A4QMS7 147 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 A6NIZ1 184 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 TPD52L2O43399 206 aaKnown RBP16.69■□□□□ 0.26
LIME1-201ENST00000309546 CDC14BO60729 498 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 LAP3P28838 519 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 GUCA1AP43080 201 aaPredicted RBP16.69■□□□□ 0.26
LIME1-201ENST00000309546 SLC9A3P48764 834 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 GDI2P50395 445 aaKnown RBP16.69■□□□□ 0.26
LIME1-201ENST00000309546 RAP1BP61224 184 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 RAP1AP62834 184 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 CCL8P80075 99 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 SPATA46Q5T0L3 261 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 C8orf82Q6P1X6 216 aaPredicted RBP16.69■□□□□ 0.26
LIME1-201ENST00000309546 TBPL2Q6SJ96 375 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 CYP4Z1Q86W10 505 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 CLDND2Q8NHS1 167 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 FNDC8Q8TC99 324 aa16.69■□□□□ 0.26
LIME1-201ENST00000309546 GTF3AQ92664 365 aaKnown RBP16.69■□□□□ 0.26
LIME1-201ENST00000309546 EIF3KQ9UBQ5 218 aaKnown RBP16.69■□□□□ 0.26
LIME1-201ENST00000309546 SVEP1Q4LDE5 3571 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 MXRA5Q9NR99 2828 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 NDUFAB1O14561 156 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 PSG4Q00888 419 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 SRSF2Q01130 221 aaKnown RBP16.68■□□□□ 0.26
LIME1-201ENST00000309546 ANKDD1AQ495B1 522 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 FAM27BQ5VT28 67 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 UGT2A3Q6UWM9 527 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 HACD2Q6Y1H2 254 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 MBOAT2Q6ZWT7 520 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 RRM2BQ7LG56 351 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 ZNF101Q8IZC7 436 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 RNF113BQ8IZP6 322 aaKnown RBP16.68■□□□□ 0.26
LIME1-201ENST00000309546 POM121L2Q96KW2 1035 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 ELAC2Q9BQ52 826 aaKnown RBP16.68■□□□□ 0.26
LIME1-201ENST00000309546 ZNF416Q9BWM5 594 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 OR2H1Q9GZK4 316 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 TMEFF2Q9UIK5 374 aaPredicted RBP16.68■□□□□ 0.26
LIME1-201ENST00000309546 ADAM18Q9Y3Q7 739 aa16.68■□□□□ 0.26
LIME1-201ENST00000309546 LOC100509620A0A075B734 347 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 CDC42EP2O14613 210 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 WNT9BO14905 357 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 PRSS23O95084 383 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 MT-ND5P03915 603 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 CST2P09228 141 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 GCH1P30793 250 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 WNT5AP41221 380 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 PSME3P61289 254 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 FHL1Q13642 323 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 PCGF3Q3KNV8 242 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 RINLQ6ZS11 566 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 FAM107BQ9H098 131 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 WNT5BQ9H1J7 359 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 LPAR2Q9HBW0 351 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 GRHPRQ9UBQ7 328 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 EGFL7Q9UHF1 273 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 RPS6KA6Q9UK32 745 aa16.67■□□□□ 0.26
LIME1-201ENST00000309546 RP2O75695 350 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 MSR1P21757 451 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 SRP14P37108 136 aaKnown RBP16.66■□□□□ 0.26
LIME1-201ENST00000309546 MPV17P39210 176 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 TMEM33P57088 247 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 PCBD1P61457 104 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 MRPS11P82912 194 aaKnown RBP16.66■□□□□ 0.26
LIME1-201ENST00000309546 MOGQ16653 247 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 TSTQ16762 297 aaKnown RBP16.66■□□□□ 0.26
LIME1-201ENST00000309546 KRTAP24-1Q3LI83 254 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 ZNF718Q3SXZ3 478 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 FGD3Q5JSP0 725 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 ZNF774Q6NX45 483 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 UNQ6126/PRO20091Q6UXV3 157 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 RFPL4BQ6ZWI9 263 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 ALDH16A1Q8IZ83 802 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 ABHD4Q8TB40 342 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 SLC25A40Q8TBP6 338 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 IPCEF1Q8WWN9 437 aaPredicted RBP16.66■□□□□ 0.26
LIME1-201ENST00000309546 CMTM5Q96DZ9 223 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 FAM46AQ96IP4 442 aaKnown RBP16.66■□□□□ 0.26
LIME1-201ENST00000309546 ZNF570Q96NI8 536 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 NDEL1Q9GZM8 345 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 NMNAT1Q9HAN9 279 aaPredicted RBP16.66■□□□□ 0.26
LIME1-201ENST00000309546 EMC7Q9NPA0 242 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 DECR2Q9NUI1 292 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 TREM2Q9NZC2 230 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 ABCD2Q9UBJ2 740 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 TIMM10BQ9Y5J6 103 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 ENPP4Q9Y6X5 453 aa16.66■□□□□ 0.26
LIME1-201ENST00000309546 B4DSR2 109 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms