RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 DEFB108BQ8NET1 73 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 KLF14Q8TD94 323 aaPredicted RBP12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 SLITRK2Q9H156 845 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 IKZF5Q9H5V7 419 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 UNKLQ9H9P5 680 aaKnown RBP12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 ELOVL3Q9HB03 270 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 LEF1Q9UJU2 399 aaPredicted RBP12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 SLC7A7Q9UM01 511 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 ZSCAN5BA6NJL1 495 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 NPIPB13A6NJU9 1138 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 NPIPB4C9JG80 1138 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 M0QX08 132 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 KPNA4O00629 521 aaPredicted RBP12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 ICMTO60725 284 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 TRMUO75648 421 aaKnown RBP12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 LYPD3O95274 346 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 IGF2P01344 180 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 IGHV2-70P01814 119 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 RNASE1P07998 156 aaKnown RBP12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 CD247P20963 164 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 CPT2P23786 658 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 ZFP36P26651 326 aaKnown RBP12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 MPV17P39210 176 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 WNT5AP41221 380 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 GUCA1AP43080 201 aaPredicted RBP12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 ARHGDIAP52565 204 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 PCBD1P61457 104 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 PPP1CBP62140 327 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 DEFA6Q01524 100 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 ZNF154Q13106 437 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 CYP51A1Q16850 503 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 TMEM155Q4W5P6 130 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 SPATA46Q5T0L3 261 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 ZNF101Q8IZC7 436 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 SLC25A40Q8TBP6 338 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 RASSF5Q8WWW0 418 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 ASB10Q8WXI3 467 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 CPPED1Q9BRF8 314 aaPredicted RBP12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 OR2J1Q9GZK6 312 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 INIPQ9NRY2 104 aa12.49□□□□□ -0.41
CCDC88B-201ENST00000301897 ERLIN1O75477 346 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 SBK2P0C263 348 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 ZNF12P17014 697 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 ZNF32P17041 273 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 TNFRSF1AP19438 455 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 TUBG1P23258 451 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 MTNR1AP48039 350 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 UGT2B15P54855 530 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 TNFAIP6P98066 277 aaPredicted RBP12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 RPL18Q07020 188 aaKnown RBP12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 TAF11Q15544 211 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 MTX3Q5HYI7 312 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 INTS11Q5TA45 600 aaKnown RBP12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 ZNF771Q7L3S4 317 aaPredicted RBP12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 PTOV1Q86YD1 416 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 GPR32P1Q8NGA4 272 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 FNDC8Q8TC99 324 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 SAMD8Q96LT4 415 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 CCDC28BQ9BUN5 200 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 RABEP2Q9H5N1 569 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 PATZ1Q9HBE1 687 aaKnown RBP12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 TUBG2Q9NRH3 451 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 ZNF69Q9UC07 566 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 KLHL21Q9UJP4 597 aa12.48□□□□□ -0.41
CCDC88B-201ENST00000301897 LOC100509620A0A075B734 347 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 A8MXK9 166 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 SURF4O15260 269 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 TIMM8AO60220 97 aaPredicted RBP12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 MT-ND1P03886 318 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 OPN1SWP03999 348 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 THY1P04216 161 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 F13BP05160 661 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 PPIAL4GP0DN37 164 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 GSTM3P21266 225 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 RBM34P42696 430 aaKnown RBP12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 MAGOHP61326 146 aaKnown RBP12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 PSG4Q00888 419 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 CD47Q08722 323 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 CDK5R2Q13319 367 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 SGCAQ16586 387 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 OCLNQ16625 522 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 AGKQ53H12 422 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 ESCO2Q56NI9 601 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 RUNDC3AQ59EK9 446 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 FAM27BQ5VT28 67 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 DLEU7Q6UYE1 221 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 ZNF283Q8N7M2 679 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 VANGL1Q8TAA9 524 aaPredicted RBP12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 ABHD4Q8TB40 342 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 SLC26A7Q8TE54 656 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 GEMIN6Q8WXD5 167 aaKnown RBP12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 NABP1Q96AH0 204 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 TLCD1Q96CP7 247 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 C7orf26Q96N11 449 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 POLR2J2Q9GZM3 115 aaKnown RBP12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 MS4A7Q9GZW8 240 aaPredicted RBP12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 POLR2J3Q9H1A7 115 aaKnown RBP12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 NPHS2Q9NP85 383 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 MAN2C1Q9NTJ4 1040 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 TMEM106BQ9NUM4 274 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms