RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 Q6ZPB1 254 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 BPIFCQ8NFQ6 507 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 NUDT22Q9BRQ3 303 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 SOX7Q9BT81 388 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 NDUFB11Q9NX14 153 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 SCML1Q9UN30 329 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 CAMK2AQ9UQM7 478 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 MN1Q10571 1320 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 SLC16A7O60669 478 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 OR7C1O76099 320 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 FABP1P07148 127 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 GHSRQ92847 366 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 TMEM106AQ96A25 262 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 FYTTD1Q96QD9 318 aaKnown RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 TRAPPC2LQ9UL33 140 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ANK1P16157 1881 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ACKR3P25106 362 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 LIPAP38571 399 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 POU3F1Q03052 451 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 EXOSC7Q15024 291 aaKnown RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 STT3BQ8TCJ2 826 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 SLC25A21Q9BQT8 299 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 TIMM29Q9BSF4 260 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 VAMP8Q9BV40 100 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 RARRES3Q9UL19 164 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 PATJQ8NI35 1801 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ADAM23O75077 832 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 SF3B4Q15427 424 aaKnown RBP eCLIP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF718Q3SXZ3 478 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 RNF212Q495C1 297 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 MOB3CQ70IA8 216 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 M1APQ8TC57 530 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 NOX4Q9NPH5 578 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 FXYD1O00168 92 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 GIPP09681 153 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 FCGR2AP12318 317 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 CSF2RAP15509 400 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 F2RP25116 425 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 MLF1P58340 268 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 PFN3P60673 137 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ASAH1Q13510 395 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 KIR2DS3Q14952 304 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF620Q6ZNG0 422 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 AMBRA1Q9C0C7 1298 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ROS1P08922 2347 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 CPMP14384 443 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 PTAFRP25105 342 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 RPL11P62913 178 aaKnown RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 STEAP1BQ6NZ63 245 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 SLC25A46Q96AG3 418 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 TMEM18Q96B42 140 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 KIRREL1Q96J84 757 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 SPATA6Q9NWH7 488 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 EMC9Q9Y3B6 208 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 EIF4EP06730 217 aaKnown RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 OR8G3PP0DMU2 310 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 CHRNB4P30926 498 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 GP2P55259 537 aaKnown RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 SLC35D2Q76EJ3 337 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 LIMS2Q7Z4I7 341 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 GAREM1Q9H706 876 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 GDE1Q9NZC3 331 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 PPT2Q9UMR5 302 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 LTBP1Q14766 1721 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 SIP14410 1827 aa9.09□□□□□ -0.96
COL6A3-201ENST00000295550 TMEM200CA6NKL6 621 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 MCRIP1C9JLW8 97 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 SIRPAP78324 504 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 KCNJ10P78508 379 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 SLC39A5Q6ZMH5 540 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 PLXDC1Q8IUK5 500 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 APH1BQ8WW43 257 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 CDCA4Q9BXL8 241 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 TOLLIPQ9H0E2 274 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 TMEM30AQ9NV96 361 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 MED9Q9NWA0 146 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 C1QBP02746 253 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 KRTDAPP60985 99 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 BTG1P62324 171 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 CDC20Q12834 499 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 TSPAN31Q12999 210 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 ADAMTSL4Q6UY14 1074 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 CDH26Q8IXH8 852 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 CADM3Q8N126 398 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 ZNF724A8MTY0 619 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 HEPACAM2A8MVW5 462 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 CLEC3BP05452 202 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 COX20Q5RI15 118 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 OR2T2Q6IF00 324 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 KLHDC8BQ8IXV7 354 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 ZFP62Q8NB50 900 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-201ENST00000295550 MFSD9Q8NBP5 474 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 OR5D18Q8NGL1 313 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 SLC25A32Q9H2D1 315 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 ANTXRLA6NF34 631 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 ZNF207O43670 478 aaKnown RBP9.08□□□□□ -0.96
COL6A3-201ENST00000295550 SRMP19623 302 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 MTNR1BP49286 362 aa9.08□□□□□ -0.96
COL6A3-201ENST00000295550 FAM74A1Q5RGS3 127 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms