RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RAB6AP20340 208 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 OR8G1Q15617 311 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 MEP1BQ16820 701 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 LHFPL2Q6ZUX7 228 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 CHST8Q9H2A9 424 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 SLC39A9Q9NUM3 307 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 RAB5CP51148 216 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 SIAH3Q8IW03 269 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 OR5H6Q8NGV6 325 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 GNG13Q9P2W3 67 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 CXCL10P02778 98 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 CAPZBP47756 277 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 EIF3IQ13347 325 aaKnown RBP17.53■□□□□ 0.4
UPF1-201ENST00000262803 FCN2Q15485 313 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 SYT14P1Q58G82 188 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 NANOGP1Q8N7R0 232 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 CST9LP1Q5W188 147 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 ALKAL2Q6UX46 152 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 OR2AE1Q8NHA4 323 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 FAM3DQ96BQ1 224 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 LCMT2O60294 686 aaKnown RBP17.52■□□□□ 0.4
UPF1-201ENST00000262803 IGLV3-27P01718 113 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 SBK3P0C264 359 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 GP2P55259 537 aaKnown RBP17.52■□□□□ 0.4
UPF1-201ENST00000262803 EDDM3BP56851 147 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 OPCMLQ14982 345 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 WBP2Q969T9 261 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 GALNT9Q9HCQ5 603 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 PLRG1O43660 514 aaKnown RBP17.52■□□□□ 0.4
UPF1-201ENST00000262803 KLK8O60259 260 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 NFYBP25208 207 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 TRA2AQ13595 282 aaKnown RBP eCLIP17.52■□□□□ 0.4
UPF1-201ENST00000262803 CPEB2Q7Z5Q1 589 aaKnown RBP17.52■□□□□ 0.4
UPF1-201ENST00000262803 NKAIN4Q8IVV8 208 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 KIAA1456Q9P272 454 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 FBXL2Q9UKC9 423 aa17.52■□□□□ 0.4
UPF1-201ENST00000262803 CRYABP02511 175 aaKnown RBP17.52■□□□□ 0.39
UPF1-201ENST00000262803 STEAP1BQ6NZ63 245 aa17.52■□□□□ 0.39
UPF1-201ENST00000262803 LFNGQ8NES3 379 aa17.52■□□□□ 0.39
UPF1-201ENST00000262803 OR6K3Q8NGY3 331 aa17.52■□□□□ 0.39
UPF1-201ENST00000262803 MRGPRX4Q96LA9 322 aa17.52■□□□□ 0.39
UPF1-201ENST00000262803 TECTBQ96PL2 329 aa17.52■□□□□ 0.39
UPF1-201ENST00000262803 MENTQ9BUN1 341 aa17.52■□□□□ 0.39
UPF1-201ENST00000262803 ZCCHC4Q9H5U6 513 aa17.52■□□□□ 0.39
UPF1-201ENST00000262803 SLC22A11Q9NSA0 550 aa17.52■□□□□ 0.39
UPF1-201ENST00000262803 TPPPO94811 219 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 LGI1O95970 557 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 ZDHHC11BP0C7U3 371 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 DEFA4P12838 97 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 STT3BQ8TCJ2 826 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 OR52A5Q9H2C5 316 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 FGF22Q9HCT0 170 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 PPT1P50897 306 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 TFAP2EQ6VUC0 442 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 ZFP82Q8N141 532 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 RNF170Q96K19 258 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 BOLA1Q9Y3E2 137 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 LOXL2Q9Y4K0 774 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 N4BP2Q86UW6 1770 aaPredicted RBP17.51■□□□□ 0.39
UPF1-201ENST00000262803 LILRA5A6NI73 299 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 FXYD1O00168 92 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 RBP2P50120 134 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 HSF1Q00613 529 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 GLYR1Q49A26 553 aaPredicted RBP17.51■□□□□ 0.39
UPF1-201ENST00000262803 DCXRQ7Z4W1 244 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 SKA3Q8IX90 412 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 KDM8Q8N371 416 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 SLC35E1Q96K37 410 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 PRRX2Q99811 253 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 IKZF5Q9H5V7 419 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 C6orf106Q9H6K1 298 aaPredicted RBP17.51■□□□□ 0.39
UPF1-201ENST00000262803 GFOD1Q9NXC2 390 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 SH2D1BO14796 132 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 PRICKLE3O43900 615 aaPredicted RBP17.51■□□□□ 0.39
UPF1-201ENST00000262803 UBE2G2P60604 165 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 CTRCQ99895 268 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 FAM117AQ9C073 453 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 HRH4Q9H3N8 390 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 TMEM129A0AVI4 362 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 SOD1P00441 154 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 MRPL58Q14197 206 aaKnown RBP17.51■□□□□ 0.39
UPF1-201ENST00000262803 SHHQ15465 462 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 ANKRD34AQ69YU3 496 aa17.51■□□□□ 0.39
UPF1-201ENST00000262803 HEYLQ9NQ87 328 aaPredicted RBP17.51■□□□□ 0.39
UPF1-201ENST00000262803 A0A1W2PPC4 97 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 HLA-HP01893 362 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 CRYAAP02489 173 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 RAD52P43351 418 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 PNLIPRP2P54317 469 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 DUSP8Q13202 625 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 FAM53BQ14153 422 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 DUSP5Q16690 384 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 OR2A2Q6IF42 318 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 PLXDC2Q6UX71 529 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 CREB3L2Q70SY1 520 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 ZNF573Q86YE8 665 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 OR10J5Q8NHC4 309 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 RIMS4Q9H426 269 aaPredicted RBP17.5■□□□□ 0.39
UPF1-201ENST00000262803 MBNL1Q9NR56 388 aaKnown RBP17.5■□□□□ 0.39
UPF1-201ENST00000262803 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms