RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 DCPSQ96C86 337 aaKnown RBP25.21■■□□□ 1.63
CLN3-262ENST00000637699 CFAP44Q96MT7 982 aa25.21■■□□□ 1.63
CLN3-262ENST00000637699 ADAMTS8Q9UP79 889 aa25.21■■□□□ 1.63
CLN3-262ENST00000637699 RTL9Q8NET4 1388 aa25.2■■□□□ 1.63
CLN3-262ENST00000637699 ADM5C9JUS6 153 aa25.2■■□□□ 1.62
CLN3-262ENST00000637699 TRIM28Q13263 835 aaKnown RBP25.2■■□□□ 1.62
CLN3-262ENST00000637699 RIC3Q7Z5B4 369 aa25.2■■□□□ 1.62
CLN3-262ENST00000637699 POLR2AP24928 1970 aaKnown RBP25.2■■□□□ 1.62
CLN3-262ENST00000637699 C2orf69Q8N8R5 385 aa25.19■■□□□ 1.62
CLN3-262ENST00000637699 ZC3H12CQ9C0D7 883 aaKnown RBP25.19■■□□□ 1.62
CLN3-262ENST00000637699 GBA2Q9HCG7 927 aaPredicted RBP25.19■■□□□ 1.62
CLN3-262ENST00000637699 DGKZQ13574 1117 aa25.18■■□□□ 1.62
CLN3-262ENST00000637699 RGMBQ6NW40 437 aa25.18■■□□□ 1.62
CLN3-262ENST00000637699 SEC31BQ9NQW1 1179 aa25.18■■□□□ 1.62
CLN3-262ENST00000637699 MBIPQ9NS73 344 aa25.18■■□□□ 1.62
CLN3-262ENST00000637699 G3V3G9 751 aa25.17■■□□□ 1.62
CLN3-262ENST00000637699 RGS19P49795 217 aa25.17■■□□□ 1.62
CLN3-262ENST00000637699 DCAF8Q5TAQ9 597 aa25.17■■□□□ 1.62
CLN3-262ENST00000637699 ZBTB38Q8NAP3 1195 aaPredicted RBP25.17■■□□□ 1.62
CLN3-262ENST00000637699 UFL1O94874 794 aa25.16■■□□□ 1.62
CLN3-262ENST00000637699 GOLGA2Q08379 1002 aa25.16■■□□□ 1.62
CLN3-262ENST00000637699 KIF4BQ2VIQ3 1234 aa25.16■■□□□ 1.62
CLN3-262ENST00000637699 PHAXQ9H814 394 aaKnown RBP25.16■■□□□ 1.62
CLN3-262ENST00000637699 ANKIB1Q9P2G1 1089 aa25.16■■□□□ 1.62
CLN3-262ENST00000637699 FAM155AB1AL88 458 aaPredicted RBP25.15■■□□□ 1.62
CLN3-262ENST00000637699 ELL2O00472 640 aaPredicted RBP25.15■■□□□ 1.62
CLN3-262ENST00000637699 VIL1P09327 827 aaKnown RBP25.15■■□□□ 1.62
CLN3-262ENST00000637699 ZNF157P51786 506 aaPredicted RBP25.15■■□□□ 1.62
CLN3-262ENST00000637699 MYD88Q99836 296 aa25.15■■□□□ 1.62
CLN3-262ENST00000637699 PODXL2Q9NZ53 605 aa25.15■■□□□ 1.62
CLN3-262ENST00000637699 ASTN2O75129 1339 aaPredicted RBP25.14■■□□□ 1.62
CLN3-262ENST00000637699 KIF23Q02241 960 aaPredicted RBP25.14■■□□□ 1.62
CLN3-262ENST00000637699 SULF1Q8IWU6 871 aa25.14■■□□□ 1.62
CLN3-262ENST00000637699 JARID2Q92833 1246 aaPredicted RBP25.14■■□□□ 1.62
CLN3-262ENST00000637699 CCDC102AQ96A19 550 aa25.14■■□□□ 1.62
CLN3-262ENST00000637699 GGA3Q9NZ52 723 aa25.14■■□□□ 1.62
CLN3-262ENST00000637699 CCDC85AQ96PX6 553 aaPredicted RBP25.13■■□□□ 1.61
CLN3-262ENST00000637699 GGA1Q9UJY5 639 aa25.13■■□□□ 1.61
CLN3-262ENST00000637699 SCN9AQ15858 1988 aa25.13■■□□□ 1.61
CLN3-262ENST00000637699 HSP90B1P14625 803 aaKnown RBP25.12■■□□□ 1.61
CLN3-262ENST00000637699 ZNF853P0CG23 659 aa25.11■■□□□ 1.61
CLN3-262ENST00000637699 CCDC152Q4G0S7 254 aa25.11■■□□□ 1.61
CLN3-262ENST00000637699 CCDC191Q8NCU4 936 aa25.1■■□□□ 1.61
CLN3-262ENST00000637699 CDCA5Q96FF9 252 aa25.1■■□□□ 1.61
CLN3-262ENST00000637699 PDE8AO60658 829 aa25.09■■□□□ 1.61
CLN3-262ENST00000637699 PCCAP05165 728 aaPredicted RBP25.09■■□□□ 1.61
CLN3-262ENST00000637699 SCARF1Q14162 830 aa25.09■■□□□ 1.61
CLN3-262ENST00000637699 RSBN1LQ6PCB5 846 aaPredicted RBP25.09■■□□□ 1.61
CLN3-262ENST00000637699 CWC25Q9NXE8 425 aaPredicted RBP25.09■■□□□ 1.61
CLN3-262ENST00000637699 TRPA1O75762 1119 aa25.08■■□□□ 1.61
CLN3-262ENST00000637699 ANGEL2Q5VTE6 544 aaKnown RBP25.08■■□□□ 1.61
CLN3-262ENST00000637699 IFT57Q9NWB7 429 aa25.08■■□□□ 1.61
CLN3-262ENST00000637699 RNF186Q9NXI6 227 aa25.08■■□□□ 1.61
CLN3-262ENST00000637699 SAGE1Q9NXZ1 904 aa25.08■■□□□ 1.61
CLN3-262ENST00000637699 APAF1O14727 1248 aa25.07■■□□□ 1.6
CLN3-262ENST00000637699 ZNF280AP59817 542 aaPredicted RBP25.07■■□□□ 1.6
CLN3-262ENST00000637699 GNAI1P63096 354 aa25.07■■□□□ 1.6
CLN3-262ENST00000637699 AGBL3Q8NEM8 1001 aa25.07■■□□□ 1.6
CLN3-262ENST00000637699 SLC34A2O95436 690 aa25.06■■□□□ 1.6
CLN3-262ENST00000637699 SLC10A3P09131 477 aa25.06■■□□□ 1.6
CLN3-262ENST00000637699 ANKRD18AQ8IVF6 992 aa25.06■■□□□ 1.6
CLN3-262ENST00000637699 C8orf58Q8NAV2 365 aa25.06■■□□□ 1.6
CLN3-262ENST00000637699 CSRNP1Q96S65 589 aa25.06■■□□□ 1.6
CLN3-262ENST00000637699 METTL22Q9BUU2 404 aaPredicted RBP25.06■■□□□ 1.6
CLN3-262ENST00000637699 XDHP47989 1333 aa25.05■■□□□ 1.6
CLN3-262ENST00000637699 USP17L8P0C7I0 530 aa25.04■■□□□ 1.6
CLN3-262ENST00000637699 CALD1Q05682 793 aaKnown RBP25.04■■□□□ 1.6
CLN3-262ENST00000637699 MYOZ2Q9NPC6 264 aa25.04■■□□□ 1.6
CLN3-262ENST00000637699 WTIPA6NIX2 430 aaPredicted RBP25.03■■□□□ 1.6
CLN3-262ENST00000637699 DDX58O95786 925 aaKnown RBP25.03■■□□□ 1.6
CLN3-262ENST00000637699 ATP2B4P23634 1241 aa25.03■■□□□ 1.6
CLN3-262ENST00000637699 GMLQ99445 158 aa25.03■■□□□ 1.6
CLN3-262ENST00000637699 SCAF8Q9UPN6 1271 aaKnown RBP25.03■■□□□ 1.6
CLN3-262ENST00000637699 USP17L3A6NCW0 530 aa25.02■■□□□ 1.6
CLN3-262ENST00000637699 USP17L4A6NCW7 530 aa25.02■■□□□ 1.6
CLN3-262ENST00000637699 CCDC30Q5VVM6 783 aa25.02■■□□□ 1.6
CLN3-262ENST00000637699 USP17L1Q7RTZ2 530 aa25.02■■□□□ 1.6
CLN3-262ENST00000637699 MAP3K2Q9Y2U5 619 aa25.02■■□□□ 1.6
CLN3-262ENST00000637699 ZNF609O15014 1411 aa25.02■■□□□ 1.6
CLN3-262ENST00000637699 AKAP11Q9UKA4 1901 aa25.02■■□□□ 1.6
CLN3-262ENST00000637699 PODNQ7Z5L7 613 aa25.01■■□□□ 1.59
CLN3-262ENST00000637699 RASAL3Q86YV0 1011 aa25.01■■□□□ 1.59
CLN3-262ENST00000637699 CTSWP56202 376 aa25■■□□□ 1.59
CLN3-262ENST00000637699 CDC5LQ99459 802 aaKnown RBP25■■□□□ 1.59
CLN3-262ENST00000637699 TNRC18O15417 2968 aaPredicted RBP24.99■■□□□ 1.59
CLN3-262ENST00000637699 MOB2Q70IA6 237 aa24.99■■□□□ 1.59
CLN3-262ENST00000637699 PRKRIP1Q9H875 184 aaPredicted RBP24.99■■□□□ 1.59
CLN3-262ENST00000637699 PSME4Q14997 1843 aa24.98■■□□□ 1.59
CLN3-262ENST00000637699 PITPNM2Q9BZ72 1349 aa24.98■■□□□ 1.59
CLN3-262ENST00000637699 PI4KAP2A4QPH2 592 aa24.98■■□□□ 1.59
CLN3-262ENST00000637699 FKBP1BP68106 108 aa24.98■■□□□ 1.59
CLN3-262ENST00000637699 PRAMEF18Q5VWM3 479 aa24.98■■□□□ 1.59
CLN3-262ENST00000637699 TSPYL6Q8N831 410 aa24.98■■□□□ 1.59
CLN3-262ENST00000637699 PI4KAP1Q8N8J0 262 aa24.98■■□□□ 1.59
CLN3-262ENST00000637699 TTLL11Q8NHH1 800 aa24.98■■□□□ 1.59
CLN3-262ENST00000637699 MXD3Q9BW11 206 aa24.98■■□□□ 1.59
CLN3-262ENST00000637699 IGKV5-2P06315 115 aa24.97■■□□□ 1.59
CLN3-262ENST00000637699 SOX10P56693 466 aa24.97■■□□□ 1.59
CLN3-262ENST00000637699 NBPF9Q3BBW0 867 aa24.97■■□□□ 1.59
CLN3-262ENST00000637699 KSR2Q6VAB6 950 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms