RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 NMRK2Q9NPI5 230 aa12.38□□□□□ -0.43
CLN3-261ENST00000637686 ANKIB1Q9P2G1 1089 aa12.38□□□□□ -0.43
CLN3-261ENST00000637686 MINPP1Q9UNW1 487 aa12.38□□□□□ -0.43
CLN3-261ENST00000637686 SPEF2Q9C093 1822 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 FZD9O00144 591 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 DDNO94850 711 aaPredicted RBP12.37□□□□□ -0.43
CLN3-261ENST00000637686 NIM1KQ8IY84 436 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 ANKRD44Q8N8A2 993 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 TBC1D16Q8TBP0 767 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 ZNF594Q96JF6 807 aaPredicted RBP12.37□□□□□ -0.43
CLN3-261ENST00000637686 GPR101Q96P66 508 aaPredicted RBP12.37□□□□□ -0.43
CLN3-261ENST00000637686 VPS33BQ9H267 617 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 RRAGCQ9HB90 399 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 PODXL2Q9NZ53 605 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 GGA1Q9UJY5 639 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 DUOX1Q9NRD9 1551 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 COL4A5P29400 1685 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 ZNF541Q9H0D2 1346 aa12.37□□□□□ -0.43
CLN3-261ENST00000637686 RIMBP2O15034 1052 aa12.36□□□□□ -0.43
CLN3-261ENST00000637686 UFL1O94874 794 aa12.36□□□□□ -0.43
CLN3-261ENST00000637686 UBTFL1P0CB47 393 aaPredicted RBP12.36□□□□□ -0.43
CLN3-261ENST00000637686 KIAA2012Q0VF49 1180 aa12.36□□□□□ -0.43
CLN3-261ENST00000637686 AAMPQ13685 434 aa12.36□□□□□ -0.43
CLN3-261ENST00000637686 WASHC4Q2M389 1173 aa12.36□□□□□ -0.43
CLN3-261ENST00000637686 RABL6Q3YEC7 729 aaPredicted RBP12.36□□□□□ -0.43
CLN3-261ENST00000637686 TAF7LQ5H9L4 462 aa12.36□□□□□ -0.43
CLN3-261ENST00000637686 TMEM57Q8N5G2 664 aa12.36□□□□□ -0.43
CLN3-261ENST00000637686 MEIS3Q99687 375 aa12.36□□□□□ -0.43
CLN3-261ENST00000637686 XDHP47989 1333 aa12.36□□□□□ -0.43
CLN3-261ENST00000637686 LTBP1Q14766 1721 aa12.35□□□□□ -0.43
CLN3-261ENST00000637686 KIF3CO14782 793 aa12.35□□□□□ -0.43
CLN3-261ENST00000637686 ATP2B4P23634 1241 aa12.35□□□□□ -0.43
CLN3-261ENST00000637686 EIF6P56537 245 aaKnown RBP12.35□□□□□ -0.43
CLN3-261ENST00000637686 FTSJ3Q8IY81 847 aaKnown RBP12.35□□□□□ -0.43
CLN3-261ENST00000637686 DZIP1LQ8IYY4 767 aaKnown RBP12.35□□□□□ -0.43
CLN3-261ENST00000637686 EYA3Q99504 573 aa12.35□□□□□ -0.43
CLN3-261ENST00000637686 WTIPA6NIX2 430 aaPredicted RBP12.34□□□□□ -0.43
CLN3-261ENST00000637686 GNAI3P08754 354 aa12.34□□□□□ -0.43
CLN3-261ENST00000637686 RLBP1P12271 317 aa12.34□□□□□ -0.43
CLN3-261ENST00000637686 CHRNDQ07001 517 aa12.34□□□□□ -0.43
CLN3-261ENST00000637686 LDHAL6AQ6ZMR3 332 aa12.34□□□□□ -0.43
CLN3-261ENST00000637686 ZC3H12CQ9C0D7 883 aaKnown RBP12.34□□□□□ -0.43
CLN3-261ENST00000637686 ANKRD2Q9GZV1 360 aa12.34□□□□□ -0.43
CLN3-261ENST00000637686 ZNRF3Q9ULT6 936 aa12.34□□□□□ -0.43
CLN3-261ENST00000637686 HDAC5Q9UQL6 1122 aa12.34□□□□□ -0.43
CLN3-261ENST00000637686 LRRFIP2Q9Y608 721 aaKnown RBP12.34□□□□□ -0.43
CLN3-261ENST00000637686 TAF5LO75529 589 aa12.33□□□□□ -0.44
CLN3-261ENST00000637686 DOK7Q18PE1 504 aa12.33□□□□□ -0.44
CLN3-261ENST00000637686 HELBQ8NG08 1087 aaPredicted RBP12.33□□□□□ -0.44
CLN3-261ENST00000637686 PUS3Q9BZE2 481 aaKnown RBP12.33□□□□□ -0.44
CLN3-261ENST00000637686 DBNDD1Q9H9R9 158 aa12.33□□□□□ -0.44
CLN3-261ENST00000637686 CNNM1Q9NRU3 951 aa12.33□□□□□ -0.44
CLN3-261ENST00000637686 GJA3Q9Y6H8 435 aa12.33□□□□□ -0.44
CLN3-261ENST00000637686 YDJCA8MPS7 323 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 POTECB2RU33 542 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 G3V3G9 751 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 PLIN1O60240 522 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 RAD17O75943 681 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 VEGFAP15692 232 aaPredicted RBP12.32□□□□□ -0.44
CLN3-261ENST00000637686 CXCL9Q07325 125 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 DCAF8Q5TAQ9 597 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 ITPRIPQ8IWB1 547 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 GPC2Q8N158 579 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 PANK1Q8TE04 598 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 CHMP4BQ9H444 224 aaKnown RBP12.32□□□□□ -0.44
CLN3-261ENST00000637686 LEMD3Q9Y2U8 911 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 ZNF804BA4D1E1 1349 aa12.32□□□□□ -0.44
CLN3-261ENST00000637686 WDR90Q96KV7 1748 aa12.31□□□□□ -0.44
CLN3-261ENST00000637686 SNAP23O00161 211 aa12.31□□□□□ -0.44
CLN3-261ENST00000637686 ECE2O60344 883 aa12.31□□□□□ -0.44
CLN3-261ENST00000637686 GNAI2P04899 355 aa12.31□□□□□ -0.44
CLN3-261ENST00000637686 KCNJ4P48050 445 aa12.31□□□□□ -0.44
CLN3-261ENST00000637686 RFX5P48382 616 aaPredicted RBP12.31□□□□□ -0.44
CLN3-261ENST00000637686 C16orf71Q8IYS4 520 aaPredicted RBP12.31□□□□□ -0.44
CLN3-261ENST00000637686 KLHDC4Q8TBB5 520 aa12.31□□□□□ -0.44
CLN3-261ENST00000637686 L3MBTL3Q96JM7 780 aaPredicted RBP12.31□□□□□ -0.44
CLN3-261ENST00000637686 RIPOR2Q9Y4F9 1068 aa12.31□□□□□ -0.44
CLN3-261ENST00000637686 KLRK1P26718 216 aa12.3□□□□□ -0.44
CLN3-261ENST00000637686 LRRC24Q50LG9 513 aa12.3□□□□□ -0.44
CLN3-261ENST00000637686 CIAPIN1Q6FI81 312 aa12.3□□□□□ -0.44
CLN3-261ENST00000637686 TXNRD3Q86VQ6 643 aa12.3□□□□□ -0.44
CLN3-261ENST00000637686 KCNQ5Q9NR82 932 aa12.3□□□□□ -0.44
CLN3-261ENST00000637686 MED23Q9ULK4 1368 aa12.3□□□□□ -0.44
CLN3-261ENST00000637686 IQCA1LA6NCM1 817 aa12.29□□□□□ -0.44
CLN3-261ENST00000637686 ZBTB7BO15156 539 aaPredicted RBP12.29□□□□□ -0.44
CLN3-261ENST00000637686 C1QTNF8P60827 252 aa12.29□□□□□ -0.44
CLN3-261ENST00000637686 PTPN12Q05209 780 aaKnown RBP12.29□□□□□ -0.44
CLN3-261ENST00000637686 TNIP1Q15025 636 aa12.29□□□□□ -0.44
CLN3-261ENST00000637686 DDX19BQ9UMR2 479 aa12.29□□□□□ -0.44
CLN3-261ENST00000637686 MROH5Q6ZUA9 1318 aa12.29□□□□□ -0.44
CLN3-261ENST00000637686 PSMD14O00487 310 aa12.28□□□□□ -0.44
CLN3-261ENST00000637686 SRGAP3O43295 1099 aa12.28□□□□□ -0.44
CLN3-261ENST00000637686 TOMM70O94826 608 aa12.28□□□□□ -0.44
CLN3-261ENST00000637686 SCNN1DP51172 638 aa12.28□□□□□ -0.44
CLN3-261ENST00000637686 MVPQ14764 893 aaKnown RBP12.28□□□□□ -0.44
CLN3-261ENST00000637686 METTL24Q5JXM2 366 aa12.28□□□□□ -0.44
CLN3-261ENST00000637686 SIL1Q9H173 461 aa12.28□□□□□ -0.44
CLN3-261ENST00000637686 TAF1DQ9H5J8 278 aaPredicted RBP12.28□□□□□ -0.44
CLN3-261ENST00000637686 C1orf115Q9H7X2 142 aa12.28□□□□□ -0.44
CLN3-261ENST00000637686 HACL1Q9UJ83 578 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms