RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 GPRC5DQ9NZD1 345 aa24.42■■□□□ 1.5
CLN3-260ENST00000637578 GGA1Q9UJY5 639 aa24.42■■□□□ 1.5
CLN3-260ENST00000637578 RAD17O75943 681 aa24.42■■□□□ 1.5
CLN3-260ENST00000637578 FOXO4P98177 505 aa24.42■■□□□ 1.5
CLN3-260ENST00000637578 ALDH1L2Q3SY69 923 aa24.42■■□□□ 1.5
CLN3-260ENST00000637578 EAPPQ56P03 285 aaPredicted RBP24.42■■□□□ 1.5
CLN3-260ENST00000637578 MINPP1Q9UNW1 487 aa24.42■■□□□ 1.5
CLN3-260ENST00000637578 XDHP47989 1333 aa24.41■■□□□ 1.5
CLN3-260ENST00000637578 GRM8O00222 908 aa24.41■■□□□ 1.5
CLN3-260ENST00000637578 RIMBP2O15034 1052 aa24.41■■□□□ 1.5
CLN3-260ENST00000637578 UFL1O94874 794 aa24.41■■□□□ 1.5
CLN3-260ENST00000637578 ITGBL1O95965 494 aaPredicted RBP24.41■■□□□ 1.5
CLN3-260ENST00000637578 ITGA6P23229 1130 aa24.41■■□□□ 1.5
CLN3-260ENST00000637578 HTRA3P83110 453 aa24.41■■□□□ 1.5
CLN3-260ENST00000637578 GPR101Q96P66 508 aaPredicted RBP24.41■■□□□ 1.5
CLN3-260ENST00000637578 SRCIN1Q9C0H9 1055 aa24.41■■□□□ 1.5
CLN3-260ENST00000637578 PTPRCP08575 1304 aa24.41■■□□□ 1.5
CLN3-260ENST00000637578 CT47B1P0C2W7 299 aaPredicted RBP24.4■■□□□ 1.5
CLN3-260ENST00000637578 FAM161AQ3B820 660 aa24.4■■□□□ 1.5
CLN3-260ENST00000637578 ZC3H12CQ9C0D7 883 aaKnown RBP24.4■■□□□ 1.5
CLN3-260ENST00000637578 DBNDD1Q9H9R9 158 aa24.4■■□□□ 1.5
CLN3-260ENST00000637578 PASKQ96RG2 1323 aa24.4■■□□□ 1.5
CLN3-260ENST00000637578 ATP2B4P23634 1241 aa24.39■■□□□ 1.5
CLN3-260ENST00000637578 GMPSP49915 693 aaPredicted RBP24.39■■□□□ 1.5
CLN3-260ENST00000637578 SLC4A10Q6U841 1118 aa24.39■■□□□ 1.5
CLN3-260ENST00000637578 USP50Q70EL3 339 aaPredicted RBP24.39■■□□□ 1.5
CLN3-260ENST00000637578 ECE2O60344 883 aa24.38■■□□□ 1.49
CLN3-260ENST00000637578 IGHMBP2P38935 993 aaKnown RBP24.37■■□□□ 1.49
CLN3-260ENST00000637578 DOK7Q18PE1 504 aa24.37■■□□□ 1.49
CLN3-260ENST00000637578 EPHA10Q5JZY3 1008 aa24.37■■□□□ 1.49
CLN3-260ENST00000637578 ADARB2Q9NS39 739 aaKnown RBP24.37■■□□□ 1.49
CLN3-260ENST00000637578 C9orf78Q9NZ63 289 aaPredicted RBP24.37■■□□□ 1.49
CLN3-260ENST00000637578 CLEC11AQ9Y240 323 aa24.37■■□□□ 1.49
CLN3-260ENST00000637578 UTYO14607 1347 aa24.37■■□□□ 1.49
CLN3-260ENST00000637578 WTIPA6NIX2 430 aaPredicted RBP24.36■■□□□ 1.49
CLN3-260ENST00000637578 PSMD14O00487 310 aa24.36■■□□□ 1.49
CLN3-260ENST00000637578 DPF2Q92785 391 aa24.36■■□□□ 1.49
CLN3-260ENST00000637578 KCNQ5Q9NR82 932 aa24.36■■□□□ 1.49
CLN3-260ENST00000637578 ANKRD18BA2A2Z9 1011 aa24.35■■□□□ 1.49
CLN3-260ENST00000637578 CNTROBQ8N137 903 aa24.35■■□□□ 1.49
CLN3-260ENST00000637578 KLRG1Q96E93 195 aa24.35■■□□□ 1.49
CLN3-260ENST00000637578 BCL2L13Q9BXK5 485 aa24.35■■□□□ 1.49
CLN3-260ENST00000637578 CCT4P50991 539 aaKnown RBP24.34■■□□□ 1.49
CLN3-260ENST00000637578 BRPF1P55201 1214 aaPredicted RBP24.34■■□□□ 1.49
CLN3-260ENST00000637578 MAP1SQ66K74 1059 aaPredicted RBP24.34■■□□□ 1.49
CLN3-260ENST00000637578 LMBR1LQ6UX01 489 aa24.34■■□□□ 1.49
CLN3-260ENST00000637578 IFIT5Q13325 482 aaKnown RBP24.33■■□□□ 1.49
CLN3-260ENST00000637578 KAZALD1Q96I82 304 aa24.33■■□□□ 1.49
CLN3-260ENST00000637578 MPHOSPH8Q99549 860 aa24.33■■□□□ 1.49
CLN3-260ENST00000637578 CREBZFQ9NS37 354 aa24.33■■□□□ 1.49
CLN3-260ENST00000637578 VIL1P09327 827 aaKnown RBP24.33■■□□□ 1.48
CLN3-260ENST00000637578 NBPF7P0C2Y1 421 aaPredicted RBP24.33■■□□□ 1.48
CLN3-260ENST00000637578 RPS12P25398 132 aaKnown RBP24.33■■□□□ 1.48
CLN3-260ENST00000637578 ANKRD2Q9GZV1 360 aa24.33■■□□□ 1.48
CLN3-260ENST00000637578 CNOT7Q9UIV1 285 aaKnown RBP24.33■■□□□ 1.48
CLN3-260ENST00000637578 LEMD3Q9Y2U8 911 aa24.33■■□□□ 1.48
CLN3-260ENST00000637578 ZBTB12Q9Y330 459 aaPredicted RBP24.33■■□□□ 1.48
CLN3-260ENST00000637578 MED23Q9ULK4 1368 aa24.32■■□□□ 1.48
CLN3-260ENST00000637578 SMC4Q9NTJ3 1288 aa24.32■■□□□ 1.48
CLN3-260ENST00000637578 PGAP2Q9UHJ9 254 aa24.32■■□□□ 1.48
CLN3-260ENST00000637578 PODNQ7Z5L7 613 aa24.31■■□□□ 1.48
CLN3-260ENST00000637578 JMYQ8N9B5 988 aa24.31■■□□□ 1.48
CLN3-260ENST00000637578 ZBED9Q6R2W3 1325 aa24.3■■□□□ 1.48
CLN3-260ENST00000637578 HIRAP54198 1017 aaPredicted RBP24.3■■□□□ 1.48
CLN3-260ENST00000637578 SUCLG2Q96I99 432 aa24.3■■□□□ 1.48
CLN3-260ENST00000637578 SCN9AQ15858 1988 aa24.3■■□□□ 1.48
CLN3-260ENST00000637578 SPEF2Q9C093 1822 aa24.3■■□□□ 1.48
CLN3-260ENST00000637578 SHTN1A0MZ66 631 aa24.29■■□□□ 1.48
CLN3-260ENST00000637578 G3V3G9 751 aa24.29■■□□□ 1.48
CLN3-260ENST00000637578 CHRNDQ07001 517 aa24.29■■□□□ 1.48
CLN3-260ENST00000637578 DCAF8Q5TAQ9 597 aa24.29■■□□□ 1.48
CLN3-260ENST00000637578 MICALL2Q8IY33 904 aa24.29■■□□□ 1.48
CLN3-260ENST00000637578 ZNF609O15014 1411 aa24.29■■□□□ 1.48
CLN3-260ENST00000637578 H7C1D1 291 aa24.29■■□□□ 1.48
CLN3-260ENST00000637578 CCDC57Q2TAC2 916 aa24.29■■□□□ 1.48
CLN3-260ENST00000637578 ZC3H15Q8WU90 426 aaKnown RBP24.29■■□□□ 1.48
CLN3-260ENST00000637578 USP44Q9H0E7 712 aa24.29■■□□□ 1.48
CLN3-260ENST00000637578 ZNF804BA4D1E1 1349 aa24.28■■□□□ 1.48
CLN3-260ENST00000637578 RARSP54136 660 aaKnown RBP24.28■■□□□ 1.48
CLN3-260ENST00000637578 RABL6Q3YEC7 729 aaPredicted RBP24.28■■□□□ 1.48
CLN3-260ENST00000637578 CHMP3Q9Y3E7 222 aa24.28■■□□□ 1.48
CLN3-260ENST00000637578 TMEM88BA6NKF7 163 aa24.27■■□□□ 1.48
CLN3-260ENST00000637578 TXNRD3Q86VQ6 643 aa24.27■■□□□ 1.48
CLN3-260ENST00000637578 TRPM4Q8TD43 1214 aa24.27■■□□□ 1.48
CLN3-260ENST00000637578 GMLQ99445 158 aa24.26■■□□□ 1.47
CLN3-260ENST00000637578 COA1Q9GZY4 146 aa24.26■■□□□ 1.47
CLN3-260ENST00000637578 NOB1Q9ULX3 412 aaKnown RBP24.26■■□□□ 1.47
CLN3-260ENST00000637578 IRS2Q9Y4H2 1338 aa24.26■■□□□ 1.47
CLN3-260ENST00000637578 C15orf52Q6ZUT6 534 aaKnown RBP24.25■■□□□ 1.47
CLN3-260ENST00000637578 AGBL3Q8NEM8 1001 aa24.25■■□□□ 1.47
CLN3-260ENST00000637578 ZNF594Q96JF6 807 aaPredicted RBP24.25■■□□□ 1.47
CLN3-260ENST00000637578 RSBN1LQ6PCB5 846 aaPredicted RBP24.25■■□□□ 1.47
CLN3-260ENST00000637578 LDHAL6AQ6ZMR3 332 aa24.25■■□□□ 1.47
CLN3-260ENST00000637578 ANKRD44Q8N8A2 993 aa24.25■■□□□ 1.47
CLN3-260ENST00000637578 BICC1Q9H694 974 aaKnown RBP24.25■■□□□ 1.47
CLN3-260ENST00000637578 USP17L3A6NCW0 530 aa24.24■■□□□ 1.47
CLN3-260ENST00000637578 USP17L4A6NCW7 530 aa24.24■■□□□ 1.47
CLN3-260ENST00000637578 KLRK1P26718 216 aa24.24■■□□□ 1.47
CLN3-260ENST00000637578 USP17L1Q7RTZ2 530 aa24.24■■□□□ 1.47
CLN3-260ENST00000637578 SAMD7Q7Z3H4 446 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms