RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 SUCLG2Q96I99 432 aa18.46■□□□□ 0.55
PNKP-221ENST00000627317 HDAC5Q9UQL6 1122 aa18.46■□□□□ 0.55
PNKP-221ENST00000627317 PPIP5K2O43314 1243 aa18.45■□□□□ 0.54
PNKP-221ENST00000627317 RPS8P62241 208 aaKnown RBP18.45■□□□□ 0.54
PNKP-221ENST00000627317 C20orf194Q5TEA3 1177 aa18.45■□□□□ 0.54
PNKP-221ENST00000627317 SMC1BQ8NDV3 1235 aa18.45■□□□□ 0.54
PNKP-221ENST00000627317 SUPT20HQ8NEM7 779 aa18.45■□□□□ 0.54
PNKP-221ENST00000627317 TTLL11Q8NHH1 800 aa18.45■□□□□ 0.54
PNKP-221ENST00000627317 COG6Q9Y2V7 657 aa18.45■□□□□ 0.54
PNKP-221ENST00000627317 ADAMTSL1Q8N6G6 1762 aa18.45■□□□□ 0.54
PNKP-221ENST00000627317 CENPBP07199 599 aaPredicted RBP18.44■□□□□ 0.54
PNKP-221ENST00000627317 GPSM2P81274 684 aa18.44■□□□□ 0.54
PNKP-221ENST00000627317 MVPQ14764 893 aaKnown RBP18.44■□□□□ 0.54
PNKP-221ENST00000627317 CCDC85AQ96PX6 553 aaPredicted RBP18.44■□□□□ 0.54
PNKP-221ENST00000627317 TMX4Q9H1E5 349 aaPredicted RBP18.44■□□□□ 0.54
PNKP-221ENST00000627317 CHMP3Q9Y3E7 222 aa18.44■□□□□ 0.54
PNKP-221ENST00000627317 SCN4AP35499 1836 aa18.44■□□□□ 0.54
PNKP-221ENST00000627317 IQCA1LA6NCM1 817 aa18.43■□□□□ 0.54
PNKP-221ENST00000627317 POTEIP0CG38 1075 aa18.43■□□□□ 0.54
PNKP-221ENST00000627317 POTEJP0CG39 1038 aa18.43■□□□□ 0.54
PNKP-221ENST00000627317 NIM1KQ8IY84 436 aa18.43■□□□□ 0.54
PNKP-221ENST00000627317 TAF1DQ9H5J8 278 aaPredicted RBP18.43■□□□□ 0.54
PNKP-221ENST00000627317 BICC1Q9H694 974 aaKnown RBP18.43■□□□□ 0.54
PNKP-221ENST00000627317 PODXL2Q9NZ53 605 aa18.43■□□□□ 0.54
PNKP-221ENST00000627317 POLLQ9UGP5 575 aa18.43■□□□□ 0.54
PNKP-221ENST00000627317 DDX19BQ9UMR2 479 aa18.43■□□□□ 0.54
PNKP-221ENST00000627317 SUPT16HQ9Y5B9 1047 aaKnown RBP18.43■□□□□ 0.54
PNKP-221ENST00000627317 FOXO4P98177 505 aa18.42■□□□□ 0.54
PNKP-221ENST00000627317 FAM161AQ3B820 660 aa18.42■□□□□ 0.54
PNKP-221ENST00000627317 EPHA10Q5JZY3 1008 aa18.42■□□□□ 0.54
PNKP-221ENST00000627317 LMBR1LQ6UX01 489 aa18.42■□□□□ 0.54
PNKP-221ENST00000627317 GREM2Q9H772 168 aa18.42■□□□□ 0.54
PNKP-221ENST00000627317 LRRFIP2Q9Y608 721 aaKnown RBP18.42■□□□□ 0.54
PNKP-221ENST00000627317 GNAI2P04899 355 aa18.41■□□□□ 0.54
PNKP-221ENST00000627317 SCNN1DP51172 638 aa18.41■□□□□ 0.54
PNKP-221ENST00000627317 APLP1P51693 650 aa18.41■□□□□ 0.54
PNKP-221ENST00000627317 EIF6P56537 245 aaKnown RBP18.41■□□□□ 0.54
PNKP-221ENST00000627317 CHMP4BQ9H444 224 aaKnown RBP18.41■□□□□ 0.54
PNKP-221ENST00000627317 ZNRF3Q9ULT6 936 aa18.41■□□□□ 0.54
PNKP-221ENST00000627317 YDJCA8MPS7 323 aa18.4■□□□□ 0.54
PNKP-221ENST00000627317 CSF1RP07333 972 aa18.4■□□□□ 0.54
PNKP-221ENST00000627317 TBC1D16Q8TBP0 767 aa18.4■□□□□ 0.54
PNKP-221ENST00000627317 KAZALD1Q96I82 304 aa18.4■□□□□ 0.54
PNKP-221ENST00000627317 CDC5LQ99459 802 aaKnown RBP18.4■□□□□ 0.54
PNKP-221ENST00000627317 HACL1Q9UJ83 578 aa18.4■□□□□ 0.54
PNKP-221ENST00000627317 NSFL1CQ9UNZ2 370 aaKnown RBP18.4■□□□□ 0.54
PNKP-221ENST00000627317 ZBTB7BO15156 539 aaPredicted RBP18.39■□□□□ 0.53
PNKP-221ENST00000627317 CXCL9Q07325 125 aa18.39■□□□□ 0.53
PNKP-221ENST00000627317 IFIT5Q13325 482 aaKnown RBP18.39■□□□□ 0.53
PNKP-221ENST00000627317 ANKRD44Q8N8A2 993 aa18.39■□□□□ 0.53
PNKP-221ENST00000627317 ANKRD18BA2A2Z9 1011 aa18.38■□□□□ 0.53
PNKP-221ENST00000627317 ITGA6P23229 1130 aa18.38■□□□□ 0.53
PNKP-221ENST00000627317 EPHX2P34913 555 aa18.38■□□□□ 0.53
PNKP-221ENST00000627317 CCDC57Q2TAC2 916 aa18.38■□□□□ 0.53
PNKP-221ENST00000627317 RABL6Q3YEC7 729 aaPredicted RBP18.38■□□□□ 0.53
PNKP-221ENST00000627317 TAF7LQ5H9L4 462 aa18.38■□□□□ 0.53
PNKP-221ENST00000627317 LDHDQ86WU2 507 aa18.38■□□□□ 0.53
PNKP-221ENST00000627317 ANKRD18AQ8IVF6 992 aa18.38■□□□□ 0.53
PNKP-221ENST00000627317 WASHC4Q2M389 1173 aa18.37■□□□□ 0.53
PNKP-221ENST00000627317 CHADLQ6NUI6 762 aa18.37■□□□□ 0.53
PNKP-221ENST00000627317 DNAJC5GQ8N7S2 189 aa18.37■□□□□ 0.53
PNKP-221ENST00000627317 GPR101Q96P66 508 aaPredicted RBP18.37■□□□□ 0.53
PNKP-221ENST00000627317 C1orf115Q9H7X2 142 aa18.37■□□□□ 0.53
PNKP-221ENST00000627317 BSDC1Q9NW68 430 aaPredicted RBP18.37■□□□□ 0.53
PNKP-221ENST00000627317 GJA3Q9Y6H8 435 aa18.37■□□□□ 0.53
PNKP-221ENST00000627317 XDHP47989 1333 aa18.36■□□□□ 0.53
PNKP-221ENST00000627317 PASKQ96RG2 1323 aa18.35■□□□□ 0.53
PNKP-221ENST00000627317 C6orf229H3BNL8 230 aa18.35■□□□□ 0.53
PNKP-221ENST00000627317 UFL1O94874 794 aa18.35■□□□□ 0.53
PNKP-221ENST00000627317 IGHMBP2P38935 993 aaKnown RBP18.35■□□□□ 0.53
PNKP-221ENST00000627317 EPS15P42566 896 aa18.35■□□□□ 0.53
PNKP-221ENST00000627317 CRBNQ96SW2 442 aa18.35■□□□□ 0.53
PNKP-221ENST00000627317 GPRC5DQ9NZD1 345 aa18.35■□□□□ 0.53
PNKP-221ENST00000627317 MINPP1Q9UNW1 487 aa18.35■□□□□ 0.53
PNKP-221ENST00000627317 SPEF2Q9C093 1822 aa18.35■□□□□ 0.53
PNKP-221ENST00000627317 WTIPA6NIX2 430 aaPredicted RBP18.34■□□□□ 0.53
PNKP-221ENST00000627317 RAD17O75943 681 aa18.34■□□□□ 0.53
PNKP-221ENST00000627317 GMPSP49915 693 aaPredicted RBP18.34■□□□□ 0.53
PNKP-221ENST00000627317 HTRA3P83110 453 aa18.34■□□□□ 0.53
PNKP-221ENST00000627317 CIAPIN1Q6FI81 312 aa18.34■□□□□ 0.53
PNKP-221ENST00000627317 PNMA8AQ86V59 439 aaPredicted RBP18.34■□□□□ 0.53
PNKP-221ENST00000627317 EYA3Q99504 573 aa18.34■□□□□ 0.53
PNKP-221ENST00000627317 MPHOSPH8Q99549 860 aa18.34■□□□□ 0.53
PNKP-221ENST00000627317 ZBTB40Q9NUA8 1239 aa18.34■□□□□ 0.53
PNKP-221ENST00000627317 ANKIB1Q9P2G1 1089 aa18.34■□□□□ 0.53
PNKP-221ENST00000627317 GGA1Q9UJY5 639 aa18.34■□□□□ 0.53
PNKP-221ENST00000627317 DBNDD1Q9H9R9 158 aa18.33■□□□□ 0.52
PNKP-221ENST00000627317 ZNF609O15014 1411 aa18.32■□□□□ 0.52
PNKP-221ENST00000627317 RIMBP2O15034 1052 aa18.32■□□□□ 0.52
PNKP-221ENST00000627317 SRGAP3O43295 1099 aa18.32■□□□□ 0.52
PNKP-221ENST00000627317 ECE2O60344 883 aa18.32■□□□□ 0.52
PNKP-221ENST00000627317 ITGBL1O95965 494 aaPredicted RBP18.32■□□□□ 0.52
PNKP-221ENST00000627317 MTX1Q13505 466 aa18.32■□□□□ 0.52
PNKP-221ENST00000627317 EAPPQ56P03 285 aaPredicted RBP18.32■□□□□ 0.52
PNKP-221ENST00000627317 KCNQ5Q9NR82 932 aa18.32■□□□□ 0.52
PNKP-221ENST00000627317 MED23Q9ULK4 1368 aa18.31■□□□□ 0.52
PNKP-221ENST00000627317 LMOD1P29536 600 aaPredicted RBP18.31■□□□□ 0.52
PNKP-221ENST00000627317 TNIP1Q15025 636 aa18.31■□□□□ 0.52
PNKP-221ENST00000627317 DOK7Q18PE1 504 aa18.31■□□□□ 0.52
PNKP-221ENST00000627317 ZNF594Q96JF6 807 aaPredicted RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms