RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 NSFL1CQ9UNZ2 370 aaKnown RBP23.82■■□□□ 1.4
SQSTM1-216ENST00000626660 RASSF7Q02833 373 aa23.81■■□□□ 1.4
SQSTM1-216ENST00000626660 SLC51AQ86UW1 340 aa23.81■■□□□ 1.4
SQSTM1-216ENST00000626660 SUPT20HQ8NEM7 779 aa23.81■■□□□ 1.4
SQSTM1-216ENST00000626660 PSMD1Q99460 953 aa23.81■■□□□ 1.4
SQSTM1-216ENST00000626660 MINPP1Q9UNW1 487 aa23.81■■□□□ 1.4
SQSTM1-216ENST00000626660 SBF1O95248 1867 aa23.8■■□□□ 1.4
SQSTM1-216ENST00000626660 CCDC88AQ3V6T2 1871 aa23.8■■□□□ 1.4
SQSTM1-216ENST00000626660 SNED1Q8TER0 1413 aa23.8■■□□□ 1.4
SQSTM1-216ENST00000626660 ANKRD2Q9GZV1 360 aa23.8■■□□□ 1.4
SQSTM1-216ENST00000626660 XDHP47989 1333 aa23.8■■□□□ 1.4
SQSTM1-216ENST00000626660 RFX5P48382 616 aaPredicted RBP23.79■■□□□ 1.4
SQSTM1-216ENST00000626660 GPSM2P81274 684 aa23.79■■□□□ 1.4
SQSTM1-216ENST00000626660 ATP8B2P98198 1209 aa23.79■■□□□ 1.4
SQSTM1-216ENST00000626660 CRBNQ96SW2 442 aa23.79■■□□□ 1.4
SQSTM1-216ENST00000626660 LMNB1P20700 586 aa23.78■■□□□ 1.4
SQSTM1-216ENST00000626660 PTPN12Q05209 780 aaKnown RBP23.78■■□□□ 1.4
SQSTM1-216ENST00000626660 KLHDC4Q8TBB5 520 aa23.78■■□□□ 1.4
SQSTM1-216ENST00000626660 PODXL2Q9NZ53 605 aa23.78■■□□□ 1.4
SQSTM1-216ENST00000626660 RTFDC1Q9BY42 306 aaPredicted RBP23.77■■□□□ 1.4
SQSTM1-216ENST00000626660 GGA1Q9UJY5 639 aa23.77■■□□□ 1.4
SQSTM1-216ENST00000626660 PNMA6EA0A0J9YXQ4 647 aa23.76■■□□□ 1.39
SQSTM1-216ENST00000626660 C6orf229H3BNL8 230 aa23.76■■□□□ 1.39
SQSTM1-216ENST00000626660 ATP2B4P23634 1241 aa23.76■■□□□ 1.39
SQSTM1-216ENST00000626660 CHRNDQ07001 517 aa23.76■■□□□ 1.39
SQSTM1-216ENST00000626660 CEP85Q6P2H3 762 aa23.76■■□□□ 1.39
SQSTM1-216ENST00000626660 PUS3Q9BZE2 481 aaKnown RBP23.76■■□□□ 1.39
SQSTM1-216ENST00000626660 COPRSQ9NQ92 184 aa23.76■■□□□ 1.39
SQSTM1-216ENST00000626660 ZNF277Q9NRM2 450 aaPredicted RBP23.76■■□□□ 1.39
SQSTM1-216ENST00000626660 FBXO3Q9UK99 471 aa23.76■■□□□ 1.39
SQSTM1-216ENST00000626660 LTBP1Q14766 1721 aa23.76■■□□□ 1.39
SQSTM1-216ENST00000626660 EYA2O00167 538 aa23.75■■□□□ 1.39
SQSTM1-216ENST00000626660 UFL1O94874 794 aa23.75■■□□□ 1.39
SQSTM1-216ENST00000626660 C9orf131Q5VYM1 1079 aa23.75■■□□□ 1.39
SQSTM1-216ENST00000626660 RPAP2Q8IXW5 612 aaPredicted RBP23.75■■□□□ 1.39
SQSTM1-216ENST00000626660 EYA3Q99504 573 aa23.75■■□□□ 1.39
SQSTM1-216ENST00000626660 SIL1Q9H173 461 aa23.75■■□□□ 1.39
SQSTM1-216ENST00000626660 RNF181Q9P0P0 153 aa23.75■■□□□ 1.39
SQSTM1-216ENST00000626660 MROH5Q6ZUA9 1318 aa23.75■■□□□ 1.39
SQSTM1-216ENST00000626660 DICER1Q9UPY3 1922 aaKnown RBP23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 A0A1B0GUL6 1792 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 HMMRO75330 724 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 IARSP41252 1262 aaKnown RBP23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 KCNJ4P48050 445 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 POLA2Q14181 598 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 LRRC24Q50LG9 513 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 TBC1D16Q8TBP0 767 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 SSH3Q8TE77 659 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 VPS33BQ9H267 617 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 PA2G4Q9UQ80 394 aaKnown RBP23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 LEMD3Q9Y2U8 911 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 RIPOR2Q9Y4F9 1068 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 DUOX1Q9NRD9 1551 aa23.74■■□□□ 1.39
SQSTM1-216ENST00000626660 CIAO1O76071 339 aa23.73■■□□□ 1.39
SQSTM1-216ENST00000626660 METTL24Q5JXM2 366 aa23.73■■□□□ 1.39
SQSTM1-216ENST00000626660 HELBQ8NG08 1087 aaPredicted RBP23.73■■□□□ 1.39
SQSTM1-216ENST00000626660 POLLQ9UGP5 575 aa23.73■■□□□ 1.39
SQSTM1-216ENST00000626660 PPIP5K2O43314 1243 aa23.72■■□□□ 1.39
SQSTM1-216ENST00000626660 LARGE2Q8N3Y3 721 aa23.72■■□□□ 1.39
SQSTM1-216ENST00000626660 IL15P40933 162 aaPredicted RBP23.71■■□□□ 1.39
SQSTM1-216ENST00000626660 G3BP1Q13283 466 aaKnown RBP eCLIP23.71■■□□□ 1.39
SQSTM1-216ENST00000626660 AAMPQ13685 434 aa23.71■■□□□ 1.39
SQSTM1-216ENST00000626660 WASHC4Q2M389 1173 aa23.71■■□□□ 1.39
SQSTM1-216ENST00000626660 ZNF804BA4D1E1 1349 aa23.7■■□□□ 1.38
SQSTM1-216ENST00000626660 TAF5LO75529 589 aa23.7■■□□□ 1.38
SQSTM1-216ENST00000626660 PRELPP51888 382 aa23.7■■□□□ 1.38
SQSTM1-216ENST00000626660 AOC3Q16853 763 aa23.7■■□□□ 1.38
SQSTM1-216ENST00000626660 IFFO2Q5TF58 517 aa23.7■■□□□ 1.38
SQSTM1-216ENST00000626660 JDP2Q8WYK2 163 aa23.7■■□□□ 1.38
SQSTM1-216ENST00000626660 ZC3H12CQ9C0D7 883 aaKnown RBP23.7■■□□□ 1.38
SQSTM1-216ENST00000626660 KIAA2012Q0VF49 1180 aa23.69■■□□□ 1.38
SQSTM1-216ENST00000626660 OS9Q13438 667 aaPredicted RBP23.69■■□□□ 1.38
SQSTM1-216ENST00000626660 ATG9AQ7Z3C6 839 aa23.69■■□□□ 1.38
SQSTM1-216ENST00000626660 GPBP1L1Q9HC44 474 aaPredicted RBP23.69■■□□□ 1.38
SQSTM1-216ENST00000626660 CEP126Q9P2H0 1117 aa23.69■■□□□ 1.38
SQSTM1-216ENST00000626660 TIAM2Q8IVF5 1701 aa23.69■■□□□ 1.38
SQSTM1-216ENST00000626660 RIMBP2O15034 1052 aa23.68■■□□□ 1.38
SQSTM1-216ENST00000626660 SURF6O75683 361 aaKnown RBP23.68■■□□□ 1.38
SQSTM1-216ENST00000626660 NIM1KQ8IY84 436 aa23.68■■□□□ 1.38
SQSTM1-216ENST00000626660 GPR101Q96P66 508 aaPredicted RBP23.68■■□□□ 1.38
SQSTM1-216ENST00000626660 G3V3G9 751 aa23.67■■□□□ 1.38
SQSTM1-216ENST00000626660 PDE8BO95263 885 aa23.67■■□□□ 1.38
SQSTM1-216ENST00000626660 IRX6P78412 446 aaPredicted RBP23.67■■□□□ 1.38
SQSTM1-216ENST00000626660 UBE4AQ14139 1066 aa23.67■■□□□ 1.38
SQSTM1-216ENST00000626660 DCAF8Q5TAQ9 597 aa23.67■■□□□ 1.38
SQSTM1-216ENST00000626660 EXOC6Q8TAG9 804 aa23.67■■□□□ 1.38
SQSTM1-216ENST00000626660 MED23Q9ULK4 1368 aa23.66■■□□□ 1.38
SQSTM1-216ENST00000626660 ZC3H4Q9UPT8 1303 aaKnown RBP23.66■■□□□ 1.38
SQSTM1-216ENST00000626660 HSP90AB4PQ58FF6 505 aa23.65■■□□□ 1.38
SQSTM1-216ENST00000626660 SIRT2Q8IXJ6 389 aa23.65■■□□□ 1.38
SQSTM1-216ENST00000626660 VGLL2Q8N8G2 317 aa23.65■■□□□ 1.38
SQSTM1-216ENST00000626660 NOP58Q9Y2X3 529 aaKnown RBP23.65■■□□□ 1.38
SQSTM1-216ENST00000626660 WTIPA6NIX2 430 aaPredicted RBP23.64■■□□□ 1.37
SQSTM1-216ENST00000626660 PUM3Q15397 648 aaKnown RBP23.64■■□□□ 1.37
SQSTM1-216ENST00000626660 ZNF526Q8TF50 670 aaPredicted RBP23.64■■□□□ 1.37
SQSTM1-216ENST00000626660 SNAP23O00161 211 aa23.63■■□□□ 1.37
SQSTM1-216ENST00000626660 PCDHB15Q9Y5E8 787 aa23.63■■□□□ 1.37
SQSTM1-216ENST00000626660 IFIT1P09914 478 aaKnown RBP23.62■■□□□ 1.37
SQSTM1-216ENST00000626660 SLC5A1P13866 664 aa23.62■■□□□ 1.37
SQSTM1-216ENST00000626660 EIF6P56537 245 aaKnown RBP23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms