RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 TNIP1Q15025 636 aa18.82■□□□□ 0.6
LINC00643-205ENST00000623219 DNAJC5GQ8N7S2 189 aa18.82■□□□□ 0.6
LINC00643-205ENST00000623219 GPRC5DQ9NZD1 345 aa18.82■□□□□ 0.6
LINC00643-205ENST00000623219 GGA1Q9UJY5 639 aa18.82■□□□□ 0.6
LINC00643-205ENST00000623219 ARAP2Q8WZ64 1704 aa18.82■□□□□ 0.6
LINC00643-205ENST00000623219 MYH13Q9UKX3 1938 aa18.82■□□□□ 0.6
LINC00643-205ENST00000623219 PASKQ96RG2 1323 aa18.81■□□□□ 0.6
LINC00643-205ENST00000623219 DBNDD1Q9H9R9 158 aa18.81■□□□□ 0.6
LINC00643-205ENST00000623219 BSDC1Q9NW68 430 aaPredicted RBP18.81■□□□□ 0.6
LINC00643-205ENST00000623219 PTPRCP08575 1304 aa18.8■□□□□ 0.6
LINC00643-205ENST00000623219 RIMBP2O15034 1052 aa18.8■□□□□ 0.6
LINC00643-205ENST00000623219 ECE2O60344 883 aa18.8■□□□□ 0.6
LINC00643-205ENST00000623219 RAD17O75943 681 aa18.8■□□□□ 0.6
LINC00643-205ENST00000623219 EPS15P42566 896 aa18.8■□□□□ 0.6
LINC00643-205ENST00000623219 FAM161AQ3B820 660 aa18.8■□□□□ 0.6
LINC00643-205ENST00000623219 USP50Q70EL3 339 aaPredicted RBP18.8■□□□□ 0.6
LINC00643-205ENST00000623219 KLRG1Q96E93 195 aa18.8■□□□□ 0.6
LINC00643-205ENST00000623219 CLEC11AQ9Y240 323 aa18.8■□□□□ 0.6
LINC00643-205ENST00000623219 ZNF609O15014 1411 aa18.8■□□□□ 0.6
LINC00643-205ENST00000623219 GRM8O00222 908 aa18.79■□□□□ 0.6
LINC00643-205ENST00000623219 ALDH1L1O75891 902 aa18.79■□□□□ 0.6
LINC00643-205ENST00000623219 CSF1RP07333 972 aa18.79■□□□□ 0.6
LINC00643-205ENST00000623219 ITGA6P23229 1130 aa18.79■□□□□ 0.6
LINC00643-205ENST00000623219 IGHMBP2P38935 993 aaKnown RBP18.79■□□□□ 0.6
LINC00643-205ENST00000623219 GMPSP49915 693 aaPredicted RBP18.79■□□□□ 0.6
LINC00643-205ENST00000623219 MRPL50Q8N5N7 158 aaKnown RBP18.79■□□□□ 0.6
LINC00643-205ENST00000623219 GPR101Q96P66 508 aaPredicted RBP18.79■□□□□ 0.6
LINC00643-205ENST00000623219 ZC3H12CQ9C0D7 883 aaKnown RBP18.79■□□□□ 0.6
LINC00643-205ENST00000623219 ADARB2Q9NS39 739 aaKnown RBP18.79■□□□□ 0.6
LINC00643-205ENST00000623219 MED23Q9ULK4 1368 aa18.79■□□□□ 0.6
LINC00643-205ENST00000623219 ATP2B4P23634 1241 aa18.78■□□□□ 0.6
LINC00643-205ENST00000623219 SLC4A10Q6U841 1118 aa18.78■□□□□ 0.6
LINC00643-205ENST00000623219 TRMT2AQ8IZ69 625 aaKnown RBP18.78■□□□□ 0.6
LINC00643-205ENST00000623219 CDCA7LQ96GN5 454 aa18.78■□□□□ 0.6
LINC00643-205ENST00000623219 BCL2L13Q9BXK5 485 aa18.78■□□□□ 0.6
LINC00643-205ENST00000623219 SRCIN1Q9C0H9 1055 aa18.78■□□□□ 0.6
LINC00643-205ENST00000623219 CREBZFQ9NS37 354 aa18.78■□□□□ 0.6
LINC00643-205ENST00000623219 ALDH1L2Q3SY69 923 aa18.77■□□□□ 0.6
LINC00643-205ENST00000623219 MINPP1Q9UNW1 487 aa18.77■□□□□ 0.6
LINC00643-205ENST00000623219 THSD7BQ9C0I4 1608 aa18.77■□□□□ 0.6
LINC00643-205ENST00000623219 PSMD14O00487 310 aa18.76■□□□□ 0.59
LINC00643-205ENST00000623219 ITGBL1O95965 494 aaPredicted RBP18.76■□□□□ 0.59
LINC00643-205ENST00000623219 CT47B1P0C2W7 299 aaPredicted RBP18.76■□□□□ 0.59
LINC00643-205ENST00000623219 FOXO4P98177 505 aa18.76■□□□□ 0.59
LINC00643-205ENST00000623219 DOK7Q18PE1 504 aa18.76■□□□□ 0.59
LINC00643-205ENST00000623219 MAP1SQ66K74 1059 aaPredicted RBP18.76■□□□□ 0.59
LINC00643-205ENST00000623219 DIEXFQ68CQ4 756 aaKnown RBP18.76■□□□□ 0.59
LINC00643-205ENST00000623219 SSH1Q8WYL5 1049 aa18.76■□□□□ 0.59
LINC00643-205ENST00000623219 C9orf78Q9NZ63 289 aaPredicted RBP18.76■□□□□ 0.59
LINC00643-205ENST00000623219 ANKRD18BA2A2Z9 1011 aa18.75■□□□□ 0.59
LINC00643-205ENST00000623219 G3V3G9 751 aa18.75■□□□□ 0.59
LINC00643-205ENST00000623219 RPS12P25398 132 aaKnown RBP18.75■□□□□ 0.59
LINC00643-205ENST00000623219 DCAF8Q5TAQ9 597 aa18.75■□□□□ 0.59
LINC00643-205ENST00000623219 IFFO2Q5TF58 517 aa18.75■□□□□ 0.59
LINC00643-205ENST00000623219 CNTROBQ8N137 903 aa18.75■□□□□ 0.59
LINC00643-205ENST00000623219 MPHOSPH8Q99549 860 aa18.75■□□□□ 0.59
LINC00643-205ENST00000623219 CCT4P50991 539 aaKnown RBP18.74■□□□□ 0.59
LINC00643-205ENST00000623219 IFIT5Q13325 482 aaKnown RBP18.74■□□□□ 0.59
LINC00643-205ENST00000623219 JMYQ8N9B5 988 aa18.74■□□□□ 0.59
LINC00643-205ENST00000623219 DPF2Q92785 391 aa18.74■□□□□ 0.59
LINC00643-205ENST00000623219 UTYO14607 1347 aa18.74■□□□□ 0.59
LINC00643-205ENST00000623219 MICALL2Q8IY33 904 aa18.73■□□□□ 0.59
LINC00643-205ENST00000623219 ANKRD2Q9GZV1 360 aa18.73■□□□□ 0.59
LINC00643-205ENST00000623219 SMC4Q9NTJ3 1288 aa18.73■□□□□ 0.59
LINC00643-205ENST00000623219 CNOT7Q9UIV1 285 aaKnown RBP18.73■□□□□ 0.59
LINC00643-205ENST00000623219 ZBTB12Q9Y330 459 aaPredicted RBP18.73■□□□□ 0.59
LINC00643-205ENST00000623219 CHMP3Q9Y3E7 222 aa18.73■□□□□ 0.59
LINC00643-205ENST00000623219 TMEM88BA6NKF7 163 aa18.72■□□□□ 0.59
LINC00643-205ENST00000623219 LEMD3Q9Y2U8 911 aa18.72■□□□□ 0.59
LINC00643-205ENST00000623219 H7C1D1 291 aa18.71■□□□□ 0.59
LINC00643-205ENST00000623219 VIL1P09327 827 aaKnown RBP18.71■□□□□ 0.59
LINC00643-205ENST00000623219 EPHA10Q5JZY3 1008 aa18.71■□□□□ 0.59
LINC00643-205ENST00000623219 LMBR1LQ6UX01 489 aa18.71■□□□□ 0.59
LINC00643-205ENST00000623219 MIER1Q8N108 512 aa18.71■□□□□ 0.59
LINC00643-205ENST00000623219 KCNQ5Q9NR82 932 aa18.71■□□□□ 0.59
LINC00643-205ENST00000623219 ZNF804BA4D1E1 1349 aa18.71■□□□□ 0.59
LINC00643-205ENST00000623219 CNTNAP1P78357 1384 aa18.7■□□□□ 0.58
LINC00643-205ENST00000623219 CHRNDQ07001 517 aa18.7■□□□□ 0.58
LINC00643-205ENST00000623219 CCDC57Q2TAC2 916 aa18.7■□□□□ 0.58
LINC00643-205ENST00000623219 PODNQ7Z5L7 613 aa18.7■□□□□ 0.58
LINC00643-205ENST00000623219 TRPM4Q8TD43 1214 aa18.7■□□□□ 0.58
LINC00643-205ENST00000623219 ZC3H15Q8WU90 426 aaKnown RBP18.7■□□□□ 0.58
LINC00643-205ENST00000623219 SUCLG2Q96I99 432 aa18.7■□□□□ 0.58
LINC00643-205ENST00000623219 SHTN1A0MZ66 631 aa18.69■□□□□ 0.58
LINC00643-205ENST00000623219 NBPF7P0C2Y1 421 aaPredicted RBP18.69■□□□□ 0.58
LINC00643-205ENST00000623219 PGAP2Q9UHJ9 254 aa18.69■□□□□ 0.58
LINC00643-205ENST00000623219 WTIPA6NIX2 430 aaPredicted RBP18.68■□□□□ 0.58
LINC00643-205ENST00000623219 KCNJ4P48050 445 aa18.68■□□□□ 0.58
LINC00643-205ENST00000623219 HIRAP54198 1017 aaPredicted RBP18.68■□□□□ 0.58
LINC00643-205ENST00000623219 BRPF1P55201 1214 aaPredicted RBP18.68■□□□□ 0.58
LINC00643-205ENST00000623219 TAF7LQ5H9L4 462 aa18.68■□□□□ 0.58
LINC00643-205ENST00000623219 RSBN1LQ6PCB5 846 aaPredicted RBP18.68■□□□□ 0.58
LINC00643-205ENST00000623219 AGBL3Q8NEM8 1001 aa18.68■□□□□ 0.58
LINC00643-205ENST00000623219 KAZALD1Q96I82 304 aa18.68■□□□□ 0.58
LINC00643-205ENST00000623219 COA1Q9GZY4 146 aa18.68■□□□□ 0.58
LINC00643-205ENST00000623219 USP17L3A6NCW0 530 aa18.67■□□□□ 0.58
LINC00643-205ENST00000623219 USP17L4A6NCW7 530 aa18.67■□□□□ 0.58
LINC00643-205ENST00000623219 USP17L1Q7RTZ2 530 aa18.67■□□□□ 0.58
LINC00643-205ENST00000623219 KIF4BQ2VIQ3 1234 aa18.66■□□□□ 0.58
LINC00643-205ENST00000623219 RABL6Q3YEC7 729 aaPredicted RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms