RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	WTIP	A6NIX2	430 aa	Predicted RBP	11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	PPIP5K2	O43314	1243 aa		11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	CXCL9	Q07325	125 aa		11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	INTS3	Q68E01	1043 aa	Known RBP	11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	SLC4A10	Q6U841	1118 aa		11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	ANKRD18A	Q8IVF6	992 aa		11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	LARGE2	Q8N3Y3	721 aa		11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	ANKRD44	Q8N8A2	993 aa		11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	SUCLG2	Q96I99	432 aa		11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	ZNRF3	Q9ULT6	936 aa		11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	NOB1	Q9ULX3	412 aa	Known RBP	11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	SCNN1D	P51172	638 aa		11.12	□□□□□ -0.63
SSBP4-208	ENST00000600628	LMBR1L	Q6UX01	489 aa		11.12	□□□□□ -0.63
SSBP4-208	ENST00000600628	SMC1B	Q8NDV3	1235 aa		11.12	□□□□□ -0.63
SSBP4-208	ENST00000600628	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.12	□□□□□ -0.63
SSBP4-208	ENST00000600628	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.12	□□□□□ -0.63
SSBP4-208	ENST00000600628	BCAR3	O75815	825 aa		11.11	□□□□□ -0.63
SSBP4-208	ENST00000600628	TRIM27	P14373	513 aa		11.11	□□□□□ -0.63
SSBP4-208	ENST00000600628	CCT4	P50991	539 aa	Known RBP	11.11	□□□□□ -0.63
SSBP4-208	ENST00000600628	EIF6	P56537	245 aa	Known RBP	11.11	□□□□□ -0.63
SSBP4-208	ENST00000600628	WASHC4	Q2M389	1173 aa		11.11	□□□□□ -0.63
SSBP4-208	ENST00000600628	C15orf52	Q6ZUT6	534 aa	Known RBP	11.11	□□□□□ -0.63
SSBP4-208	ENST00000600628	API5	Q9BZZ5	524 aa	Known RBP	11.11	□□□□□ -0.63
SSBP4-208	ENST00000600628	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.11	□□□□□ -0.63
SSBP4-208	ENST00000600628	C9orf78	Q9NZ63	289 aa	Predicted RBP	11.11	□□□□□ -0.63
SSBP4-208	ENST00000600628	MED23	Q9ULK4	1368 aa		11.11	□□□□□ -0.63
SSBP4-208	ENST00000600628	IQCA1L	A6NCM1	817 aa		11.1	□□□□□ -0.63
SSBP4-208	ENST00000600628	ATP2B4	P23634	1241 aa		11.1	□□□□□ -0.63
SSBP4-208	ENST00000600628	APLP1	P51693	650 aa		11.1	□□□□□ -0.63
SSBP4-208	ENST00000600628	NIM1K	Q8IY84	436 aa		11.1	□□□□□ -0.63
SSBP4-208	ENST00000600628	BICC1	Q9H694	974 aa	Known RBP	11.1	□□□□□ -0.63
SSBP4-208	ENST00000600628	GGA1	Q9UJY5	639 aa		11.1	□□□□□ -0.63
SSBP4-208	ENST00000600628	RIPOR2	Q9Y4F9	1068 aa		11.1	□□□□□ -0.63
SSBP4-208	ENST00000600628	ANKRD18B	A2A2Z9	1011 aa		11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	UFL1	O94874	794 aa		11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	POTEI	P0CG38	1075 aa		11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	POTEJ	P0CG39	1038 aa		11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	RFX5	P48382	616 aa	Predicted RBP	11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	IFIT5	Q13325	482 aa	Known RBP	11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	ATF7IP	Q6VMQ6	1270 aa		11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	GPR101	Q96P66	508 aa	Predicted RBP	11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	GML	Q99445	158 aa		11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	EYA3	Q99504	573 aa		11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	GPRC5D	Q9NZD1	345 aa		11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	PGAP2	Q9UHJ9	254 aa		11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	LEMD3	Q9Y2U8	911 aa		11.09	□□□□□ -0.63
SSBP4-208	ENST00000600628	VIL1	P09327	827 aa	Known RBP	11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	IGHMBP2	P38935	993 aa	Known RBP	11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	CHRND	Q07001	517 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	MTX1	Q13505	466 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	TXNRD3	Q86VQ6	643 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	VGLL2	Q8N8G2	317 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	DPF2	Q92785	391 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	ANKRD2	Q9GZV1	360 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	KCNQ5	Q9NR82	932 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	ANKIB1	Q9P2G1	1089 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	HACL1	Q9UJ83	578 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	TNN	Q9UQP3	1299 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	GJA3	Q9Y6H8	435 aa		11.08	□□□□□ -0.64
SSBP4-208	ENST00000600628	C6orf229	H3BNL8	230 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	ECE2	O60344	883 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	ITGBL1	O95965	494 aa	Predicted RBP	11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	EPHX2	P34913	555 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	EPS15	P42566	896 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	CIAPIN1	Q6FI81	312 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	CHADL	Q6NUI6	762 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	PODN	Q7Z5L7	613 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	ZNF594	Q96JF6	807 aa	Predicted RBP	11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	MPHOSPH8	Q99549	860 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	MEIS3	Q99687	375 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	DBNDD1	Q9H9R9	158 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	PASK	Q96RG2	1323 aa		11.07	□□□□□ -0.64
SSBP4-208	ENST00000600628	PSMD14	O00487	310 aa		11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	IPO8	O15397	1037 aa	Known RBP	11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	RAD17	O75943	681 aa		11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	RPS12	P25398	132 aa	Known RBP	11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	KLRK1	P26718	216 aa		11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	GMPS	P49915	693 aa	Predicted RBP	11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	PTPN12	Q05209	780 aa	Known RBP	11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	TNIP1	Q15025	636 aa		11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	CCDC57	Q2TAC2	916 aa		11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	LDHAL6A	Q6ZMR3	332 aa		11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	PNMA8A	Q86V59	439 aa	Predicted RBP	11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	LDHD	Q86WU2	507 aa		11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	DNAJC5G	Q8N7S2	189 aa		11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	PUS3	Q9BZE2	481 aa	Known RBP	11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	POLR2A	P24928	1970 aa	Known RBP	11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	ZNF804B	A4D1E1	1349 aa		11.06	□□□□□ -0.64
SSBP4-208	ENST00000600628	SNAP23	O00161	211 aa		11.05	□□□□□ -0.64
SSBP4-208	ENST00000600628	RIMBP2	O15034	1052 aa		11.05	□□□□□ -0.64
SSBP4-208	ENST00000600628	ZBTB22	O15209	634 aa		11.05	□□□□□ -0.64
SSBP4-208	ENST00000600628	RLBP1	P12271	317 aa		11.05	□□□□□ -0.64
SSBP4-208	ENST00000600628	LMOD1	P29536	600 aa	Predicted RBP	11.05	□□□□□ -0.64
SSBP4-208	ENST00000600628	ZNF280A	P59817	542 aa	Predicted RBP	11.05	□□□□□ -0.64
SSBP4-208	ENST00000600628	DOK7	Q18PE1	504 aa		11.05	□□□□□ -0.64
SSBP4-208	ENST00000600628	USP50	Q70EL3	339 aa	Predicted RBP	11.05	□□□□□ -0.64
SSBP4-208	ENST00000600628	ATG9A	Q7Z3C6	839 aa		11.05	□□□□□ -0.64
SSBP4-208	ENST00000600628	FBXO3	Q9UK99	471 aa		11.05	□□□□□ -0.64
SSBP4-208	ENST00000600628	TRPM7	Q96QT4	1865 aa		11.04	□□□□□ -0.64

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