RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 DZIP1LQ8IYY4 767 aaKnown RBP24.53■■□□□ 1.52
SHKBP1-221ENST00000599833 ZNF646O15015 1829 aaPredicted RBP24.53■■□□□ 1.52
SHKBP1-221ENST00000599833 GLTPD2A6NH11 291 aa24.52■■□□□ 1.52
SHKBP1-221ENST00000599833 UBTFL1P0CB47 393 aaPredicted RBP24.52■■□□□ 1.52
SHKBP1-221ENST00000599833 IGHMBP2P38935 993 aaKnown RBP24.52■■□□□ 1.52
SHKBP1-221ENST00000599833 SUPT20HQ8NEM7 779 aa24.52■■□□□ 1.52
SHKBP1-221ENST00000599833 TMX4Q9H1E5 349 aaPredicted RBP24.52■■□□□ 1.52
SHKBP1-221ENST00000599833 LRRFIP2Q9Y608 721 aaKnown RBP24.52■■□□□ 1.52
SHKBP1-221ENST00000599833 XDHP47989 1333 aa24.52■■□□□ 1.52
SHKBP1-221ENST00000599833 IRS2Q9Y4H2 1338 aa24.52■■□□□ 1.52
SHKBP1-221ENST00000599833 POTECB2RU33 542 aa24.51■■□□□ 1.51
SHKBP1-221ENST00000599833 PPIP5K2O43314 1243 aa24.51■■□□□ 1.51
SHKBP1-221ENST00000599833 CCDC57Q2TAC2 916 aa24.51■■□□□ 1.51
SHKBP1-221ENST00000599833 ZNF526Q8TF50 670 aaPredicted RBP24.51■■□□□ 1.51
SHKBP1-221ENST00000599833 CHMP3Q9Y3E7 222 aa24.51■■□□□ 1.51
SHKBP1-221ENST00000599833 PLIN1O60240 522 aa24.5■■□□□ 1.51
SHKBP1-221ENST00000599833 LARGE2Q8N3Y3 721 aa24.5■■□□□ 1.51
SHKBP1-221ENST00000599833 PANK1Q8TE04 598 aa24.5■■□□□ 1.51
SHKBP1-221ENST00000599833 PUS3Q9BZE2 481 aaKnown RBP24.5■■□□□ 1.51
SHKBP1-221ENST00000599833 NMRK2Q9NPI5 230 aa24.5■■□□□ 1.51
SHKBP1-221ENST00000599833 PSME4Q14997 1843 aa24.49■■□□□ 1.51
SHKBP1-221ENST00000599833 YDJCA8MPS7 323 aa24.49■■□□□ 1.51
SHKBP1-221ENST00000599833 KIF3CO14782 793 aa24.49■■□□□ 1.51
SHKBP1-221ENST00000599833 CHRNDQ07001 517 aa24.49■■□□□ 1.51
SHKBP1-221ENST00000599833 ZBTB7BO15156 539 aaPredicted RBP24.48■■□□□ 1.51
SHKBP1-221ENST00000599833 UFL1O94874 794 aa24.48■■□□□ 1.51
SHKBP1-221ENST00000599833 KLHDC4Q8TBB5 520 aa24.48■■□□□ 1.51
SHKBP1-221ENST00000599833 MPHOSPH8Q99549 860 aa24.48■■□□□ 1.51
SHKBP1-221ENST00000599833 ANKIB1Q9P2G1 1089 aa24.48■■□□□ 1.51
SHKBP1-221ENST00000599833 GGA1Q9UJY5 639 aa24.48■■□□□ 1.51
SHKBP1-221ENST00000599833 RIPOR2Q9Y4F9 1068 aa24.48■■□□□ 1.51
SHKBP1-221ENST00000599833 SNAP23O00161 211 aa24.47■■□□□ 1.51
SHKBP1-221ENST00000599833 DDNO94850 711 aaPredicted RBP24.47■■□□□ 1.51
SHKBP1-221ENST00000599833 GNAI3P08754 354 aa24.47■■□□□ 1.51
SHKBP1-221ENST00000599833 ATP2B4P23634 1241 aa24.47■■□□□ 1.51
SHKBP1-221ENST00000599833 PTPN12Q05209 780 aaKnown RBP24.47■■□□□ 1.51
SHKBP1-221ENST00000599833 MTX1Q13505 466 aa24.47■■□□□ 1.51
SHKBP1-221ENST00000599833 GPBP1L1Q9HC44 474 aaPredicted RBP24.47■■□□□ 1.51
SHKBP1-221ENST00000599833 C6orf229H3BNL8 230 aa24.46■■□□□ 1.51
SHKBP1-221ENST00000599833 WASHC4Q2M389 1173 aa24.46■■□□□ 1.51
SHKBP1-221ENST00000599833 LRRC24Q50LG9 513 aa24.46■■□□□ 1.51
SHKBP1-221ENST00000599833 LDHAL6AQ6ZMR3 332 aa24.46■■□□□ 1.51
SHKBP1-221ENST00000599833 MED23Q9ULK4 1368 aa24.45■■□□□ 1.5
SHKBP1-221ENST00000599833 KDM2BQ8NHM5 1336 aa24.45■■□□□ 1.5
SHKBP1-221ENST00000599833 KLRK1P26718 216 aa24.45■■□□□ 1.5
SHKBP1-221ENST00000599833 C20orf194Q5TEA3 1177 aa24.45■■□□□ 1.5
SHKBP1-221ENST00000599833 TXNRD3Q86VQ6 643 aa24.45■■□□□ 1.5
SHKBP1-221ENST00000599833 FTSJ3Q8IY81 847 aaKnown RBP24.45■■□□□ 1.5
SHKBP1-221ENST00000599833 JDP2Q8WYK2 163 aa24.45■■□□□ 1.5
SHKBP1-221ENST00000599833 L3MBTL3Q96JM7 780 aaPredicted RBP24.45■■□□□ 1.5
SHKBP1-221ENST00000599833 ZNRF3Q9ULT6 936 aa24.45■■□□□ 1.5
SHKBP1-221ENST00000599833 SCN4AP35499 1836 aa24.45■■□□□ 1.5
SHKBP1-221ENST00000599833 RIMBP2O15034 1052 aa24.44■■□□□ 1.5
SHKBP1-221ENST00000599833 NIM1KQ8IY84 436 aa24.44■■□□□ 1.5
SHKBP1-221ENST00000599833 VGLL2Q8N8G2 317 aa24.44■■□□□ 1.5
SHKBP1-221ENST00000599833 HELBQ8NG08 1087 aaPredicted RBP24.44■■□□□ 1.5
SHKBP1-221ENST00000599833 LEMD3Q9Y2U8 911 aa24.44■■□□□ 1.5
SHKBP1-221ENST00000599833 TAF5LO75529 589 aa24.43■■□□□ 1.5
SHKBP1-221ENST00000599833 CXCL9Q07325 125 aa24.43■■□□□ 1.5
SHKBP1-221ENST00000599833 EYA3Q99504 573 aa24.43■■□□□ 1.5
SHKBP1-221ENST00000599833 ANKRD2Q9GZV1 360 aa24.43■■□□□ 1.5
SHKBP1-221ENST00000599833 ZNF804BA4D1E1 1349 aa24.42■■□□□ 1.5
SHKBP1-221ENST00000599833 GNAI2P04899 355 aa24.42■■□□□ 1.5
SHKBP1-221ENST00000599833 ATG9AQ7Z3C6 839 aa24.42■■□□□ 1.5
SHKBP1-221ENST00000599833 ITPRIPQ8IWB1 547 aa24.42■■□□□ 1.5
SHKBP1-221ENST00000599833 DBNDD1Q9H9R9 158 aa24.42■■□□□ 1.5
SHKBP1-221ENST00000599833 RRAGCQ9HB90 399 aa24.42■■□□□ 1.5
SHKBP1-221ENST00000599833 KCNQ5Q9NR82 932 aa24.42■■□□□ 1.5
SHKBP1-221ENST00000599833 DOK7Q18PE1 504 aa24.41■■□□□ 1.5
SHKBP1-221ENST00000599833 DPY19L2Q6NUT2 758 aa24.41■■□□□ 1.5
SHKBP1-221ENST00000599833 C15orf52Q6ZUT6 534 aaKnown RBP24.41■■□□□ 1.5
SHKBP1-221ENST00000599833 GPC2Q8N158 579 aa24.41■■□□□ 1.5
SHKBP1-221ENST00000599833 CNNM1Q9NRU3 951 aa24.41■■□□□ 1.5
SHKBP1-221ENST00000599833 ADAMTSL1Q8N6G6 1762 aa24.4■■□□□ 1.5
SHKBP1-221ENST00000599833 MVPQ14764 893 aaKnown RBP24.4■■□□□ 1.5
SHKBP1-221ENST00000599833 TAF7LQ5H9L4 462 aa24.4■■□□□ 1.5
SHKBP1-221ENST00000599833 COPRSQ9NQ92 184 aa24.4■■□□□ 1.5
SHKBP1-221ENST00000599833 PNMA6EA0A0J9YXQ4 647 aa24.39■■□□□ 1.49
SHKBP1-221ENST00000599833 ECE2O60344 883 aa24.39■■□□□ 1.49
SHKBP1-221ENST00000599833 PDE3AQ14432 1141 aa24.39■■□□□ 1.49
SHKBP1-221ENST00000599833 ZC3H12CQ9C0D7 883 aaKnown RBP24.39■■□□□ 1.49
SHKBP1-221ENST00000599833 PA2G4Q9UQ80 394 aaKnown RBP24.39■■□□□ 1.49
SHKBP1-221ENST00000599833 HDAC5Q9UQL6 1122 aa24.39■■□□□ 1.49
SHKBP1-221ENST00000599833 EYA2O00167 538 aa24.38■■□□□ 1.49
SHKBP1-221ENST00000599833 SCNN1DP51172 638 aa24.38■■□□□ 1.49
SHKBP1-221ENST00000599833 EIF6P56537 245 aaKnown RBP24.38■■□□□ 1.49
SHKBP1-221ENST00000599833 C1orf115Q9H7X2 142 aa24.38■■□□□ 1.49
SHKBP1-221ENST00000599833 COG6Q9Y2V7 657 aa24.38■■□□□ 1.49
SHKBP1-221ENST00000599833 MROH5Q6ZUA9 1318 aa24.37■■□□□ 1.49
SHKBP1-221ENST00000599833 RAD17O75943 681 aa24.37■■□□□ 1.49
SHKBP1-221ENST00000599833 MS4A1P11836 297 aa24.37■■□□□ 1.49
SHKBP1-221ENST00000599833 ZNF609O15014 1411 aa24.36■■□□□ 1.49
SHKBP1-221ENST00000599833 CIAO1O76071 339 aa24.36■■□□□ 1.49
SHKBP1-221ENST00000599833 POLA2Q14181 598 aa24.36■■□□□ 1.49
SHKBP1-221ENST00000599833 SRGAP3O43295 1099 aa24.35■■□□□ 1.49
SHKBP1-221ENST00000599833 VEGFAP15692 232 aaPredicted RBP24.35■■□□□ 1.49
SHKBP1-221ENST00000599833 FGFR2P21802 821 aa24.35■■□□□ 1.49
SHKBP1-221ENST00000599833 CIAPIN1Q6FI81 312 aa24.35■■□□□ 1.49
SHKBP1-221ENST00000599833 ZBTB40Q9NUA8 1239 aa24.35■■□□□ 1.49
SHKBP1-221ENST00000599833 FBXO3Q9UK99 471 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms