RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 COL13A1Q5TAT6 717 aaPredicted RBP13.47□□□□□ -0.25
LIG1-213ENST00000596672 TMC4Q7Z404 712 aa13.47□□□□□ -0.25
LIG1-213ENST00000596672 PNMA8AQ86V59 439 aaPredicted RBP13.47□□□□□ -0.25
LIG1-213ENST00000596672 CNTNAP1P78357 1384 aa13.46□□□□□ -0.25
LIG1-213ENST00000596672 C6orf229H3BNL8 230 aa13.46□□□□□ -0.25
LIG1-213ENST00000596672 DDX58O95786 925 aaKnown RBP13.46□□□□□ -0.25
LIG1-213ENST00000596672 VEGFBP49765 207 aa13.46□□□□□ -0.25
LIG1-213ENST00000596672 EPHA10Q5JZY3 1008 aa13.46□□□□□ -0.25
LIG1-213ENST00000596672 UBE3BQ7Z3V4 1068 aa13.46□□□□□ -0.25
LIG1-213ENST00000596672 STK31Q9BXU1 1019 aa13.46□□□□□ -0.25
LIG1-213ENST00000596672 PGAP2Q9UHJ9 254 aa13.46□□□□□ -0.25
LIG1-213ENST00000596672 PSME4Q14997 1843 aa13.46□□□□□ -0.26
LIG1-213ENST00000596672 TMEM88BA6NKF7 163 aa13.45□□□□□ -0.26
LIG1-213ENST00000596672 ECE2O60344 883 aa13.45□□□□□ -0.26
LIG1-213ENST00000596672 CCDC152Q4G0S7 254 aa13.45□□□□□ -0.26
LIG1-213ENST00000596672 BEND3Q5T5X7 828 aa13.45□□□□□ -0.26
LIG1-213ENST00000596672 USP50Q70EL3 339 aaPredicted RBP13.45□□□□□ -0.26
LIG1-213ENST00000596672 SAMD7Q7Z3H4 446 aa13.45□□□□□ -0.26
LIG1-213ENST00000596672 TXNRD3Q86VQ6 643 aa13.45□□□□□ -0.26
LIG1-213ENST00000596672 DNAAF4Q8WXU2 420 aa13.45□□□□□ -0.26
LIG1-213ENST00000596672 GLIS2Q9BZE0 524 aaPredicted RBP13.45□□□□□ -0.26
LIG1-213ENST00000596672 CNOT7Q9UIV1 285 aaKnown RBP13.45□□□□□ -0.26
LIG1-213ENST00000596672 ASTN2O75129 1339 aaPredicted RBP13.44□□□□□ -0.26
LIG1-213ENST00000596672 UFL1O94874 794 aa13.44□□□□□ -0.26
LIG1-213ENST00000596672 CSF1RP07333 972 aa13.44□□□□□ -0.26
LIG1-213ENST00000596672 HSPA1AP0DMV8 641 aaKnown RBP13.44□□□□□ -0.26
LIG1-213ENST00000596672 HSPA1BP0DMV9 641 aaKnown RBP13.44□□□□□ -0.26
LIG1-213ENST00000596672 KLRK1P26718 216 aa13.44□□□□□ -0.26
LIG1-213ENST00000596672 LMOD1P29536 600 aaPredicted RBP13.44□□□□□ -0.26
LIG1-213ENST00000596672 FKBP5Q13451 457 aaPredicted RBP13.44□□□□□ -0.26
LIG1-213ENST00000596672 IFFO2Q5TF58 517 aa13.44□□□□□ -0.26
LIG1-213ENST00000596672 PLA2G12BQ9BX93 195 aa13.44□□□□□ -0.26
LIG1-213ENST00000596672 TMX4Q9H1E5 349 aaPredicted RBP13.44□□□□□ -0.26
LIG1-213ENST00000596672 ADARB2Q9NS39 739 aaKnown RBP13.44□□□□□ -0.26
LIG1-213ENST00000596672 MINPP1Q9UNW1 487 aa13.44□□□□□ -0.26
LIG1-213ENST00000596672 A0A1B0GUL6 1792 aa13.43□□□□□ -0.26
LIG1-213ENST00000596672 SNAP23O00161 211 aa13.43□□□□□ -0.26
LIG1-213ENST00000596672 FOXO4P98177 505 aa13.43□□□□□ -0.26
LIG1-213ENST00000596672 FAM161AQ3B820 660 aa13.43□□□□□ -0.26
LIG1-213ENST00000596672 MICALL2Q8IY33 904 aa13.43□□□□□ -0.26
LIG1-213ENST00000596672 LINS1Q8NG48 757 aa13.43□□□□□ -0.26
LIG1-213ENST00000596672 RASSF10A6NK89 507 aa13.42□□□□□ -0.26
LIG1-213ENST00000596672 VIL1P09327 827 aaKnown RBP13.42□□□□□ -0.26
LIG1-213ENST00000596672 TNIP1Q15025 636 aa13.42□□□□□ -0.26
LIG1-213ENST00000596672 ANKRD18AQ8IVF6 992 aa13.42□□□□□ -0.26
LIG1-213ENST00000596672 CDCA7LQ96GN5 454 aa13.42□□□□□ -0.26
LIG1-213ENST00000596672 KAZALD1Q96I82 304 aa13.42□□□□□ -0.26
LIG1-213ENST00000596672 GMLQ99445 158 aa13.42□□□□□ -0.26
LIG1-213ENST00000596672 MXD3Q9BW11 206 aa13.42□□□□□ -0.26
LIG1-213ENST00000596672 IRS2Q9Y4H2 1338 aa13.41□□□□□ -0.26
LIG1-213ENST00000596672 NEXNQ0ZGT2 675 aa13.41□□□□□ -0.26
LIG1-213ENST00000596672 TBC1D10BQ4KMP7 808 aaPredicted RBP13.41□□□□□ -0.26
LIG1-213ENST00000596672 DPF2Q92785 391 aa13.41□□□□□ -0.26
LIG1-213ENST00000596672 BCL2L13Q9BXK5 485 aa13.41□□□□□ -0.26
LIG1-213ENST00000596672 BSDC1Q9NW68 430 aaPredicted RBP13.41□□□□□ -0.26
LIG1-213ENST00000596672 ANKIB1Q9P2G1 1089 aa13.41□□□□□ -0.26
LIG1-213ENST00000596672 GGA1Q9UJY5 639 aa13.41□□□□□ -0.26
LIG1-213ENST00000596672 XDHP47989 1333 aa13.4□□□□□ -0.26
LIG1-213ENST00000596672 FOXN1O15353 648 aa13.4□□□□□ -0.26
LIG1-213ENST00000596672 ITGA6P23229 1130 aa13.4□□□□□ -0.26
LIG1-213ENST00000596672 MRPL50Q8N5N7 158 aaKnown RBP13.4□□□□□ -0.26
LIG1-213ENST00000596672 CHMP4AQ9BY43 222 aa13.4□□□□□ -0.26
LIG1-213ENST00000596672 USP48Q86UV5 1035 aa13.39□□□□□ -0.27
LIG1-213ENST00000596672 EYA3Q99504 573 aa13.39□□□□□ -0.27
LIG1-213ENST00000596672 ZC3H12CQ9C0D7 883 aaKnown RBP13.39□□□□□ -0.27
LIG1-213ENST00000596672 ATP2B4P23634 1241 aa13.38□□□□□ -0.27
LIG1-213ENST00000596672 CCT4P50991 539 aaKnown RBP13.38□□□□□ -0.27
LIG1-213ENST00000596672 SLFN5Q08AF3 891 aa13.38□□□□□ -0.27
LIG1-213ENST00000596672 DEFB115Q30KQ5 88 aa13.38□□□□□ -0.27
LIG1-213ENST00000596672 RBM26Q5T8P6 1007 aaKnown RBP13.38□□□□□ -0.27
LIG1-213ENST00000596672 TRMT2AQ8IZ69 625 aaKnown RBP13.38□□□□□ -0.27
LIG1-213ENST00000596672 ZNF594Q96JF6 807 aaPredicted RBP13.38□□□□□ -0.27
LIG1-213ENST00000596672 ZIC5Q96T25 663 aa13.38□□□□□ -0.27
LIG1-213ENST00000596672 CDC5LQ99459 802 aaKnown RBP13.38□□□□□ -0.27
LIG1-213ENST00000596672 MYH16Q9H6N6 1097 aa13.38□□□□□ -0.27
LIG1-213ENST00000596672 WBP1LQ9NX94 342 aa13.38□□□□□ -0.27
LIG1-213ENST00000596672 THSD7BQ9C0I4 1608 aa13.38□□□□□ -0.27
LIG1-213ENST00000596672 ADM5C9JUS6 153 aa13.37□□□□□ -0.27
LIG1-213ENST00000596672 HSP90B1P14625 803 aaKnown RBP13.37□□□□□ -0.27
LIG1-213ENST00000596672 ZNF280AP59817 542 aaPredicted RBP13.37□□□□□ -0.27
LIG1-213ENST00000596672 CYP4F22Q6NT55 531 aa13.37□□□□□ -0.27
LIG1-213ENST00000596672 RSBN1LQ6PCB5 846 aaPredicted RBP13.37□□□□□ -0.27
LIG1-213ENST00000596672 HELBQ8NG08 1087 aaPredicted RBP13.37□□□□□ -0.27
LIG1-213ENST00000596672 ZC3H15Q8WU90 426 aaKnown RBP13.37□□□□□ -0.27
LIG1-213ENST00000596672 SSH1Q8WYL5 1049 aa13.37□□□□□ -0.27
LIG1-213ENST00000596672 SCAF8Q9UPN6 1271 aaKnown RBP13.37□□□□□ -0.27
LIG1-213ENST00000596672 TLL2Q9Y6L7 1015 aa13.37□□□□□ -0.27
LIG1-213ENST00000596672 ZNF609O15014 1411 aa13.37□□□□□ -0.27
LIG1-213ENST00000596672 WDR33Q9C0J8 1336 aaKnown RBP13.37□□□□□ -0.27
LIG1-213ENST00000596672 MED23Q9ULK4 1368 aa13.36□□□□□ -0.27
LIG1-213ENST00000596672 H7C1D1 291 aa13.36□□□□□ -0.27
LIG1-213ENST00000596672 AOC2O75106 756 aa13.36□□□□□ -0.27
LIG1-213ENST00000596672 TAF5LO75529 589 aa13.36□□□□□ -0.27
LIG1-213ENST00000596672 CELF2O95319 508 aaKnown RBP13.36□□□□□ -0.27
LIG1-213ENST00000596672 NBPF7P0C2Y1 421 aaPredicted RBP13.36□□□□□ -0.27
LIG1-213ENST00000596672 CHRNDQ07001 517 aa13.36□□□□□ -0.27
LIG1-213ENST00000596672 DACT2Q5SW24 774 aa13.36□□□□□ -0.27
LIG1-213ENST00000596672 LMBR1LQ6UX01 489 aa13.36□□□□□ -0.27
LIG1-213ENST00000596672 SAPCD2Q86UD0 394 aa13.36□□□□□ -0.27
LIG1-213ENST00000596672 SUCLG2Q96I99 432 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms