RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 SCN7AQ01118 1682 aa16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 SMARCA5O60264 1052 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 TM4SF1P30408 202 aa16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 RFX5P48382 616 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 RGS19P49795 217 aa16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 CTSWP56202 376 aa16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 IFIT5Q13325 482 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 TAF7LQ5H9L4 462 aa16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 SLC10A5Q5PT55 438 aa16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 TTLL11Q8NHH1 800 aa16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 KIF1BPQ96EK5 621 aa16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 CCDC85AQ96PX6 553 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-209ENST00000595803 ANKRD18BA2A2Z9 1011 aa16.11■□□□□ 0.17
SHKBP1-209ENST00000595803 PTPN12Q05209 780 aaKnown RBP16.11■□□□□ 0.17
SHKBP1-209ENST00000595803 WBP1LQ9NX94 342 aa16.11■□□□□ 0.17
SHKBP1-209ENST00000595803 CCDC85CA6NKD9 419 aa16.1■□□□□ 0.17
SHKBP1-209ENST00000595803 SERPINB2P05120 415 aa16.1■□□□□ 0.17
SHKBP1-209ENST00000595803 VEGFBP49765 207 aa16.1■□□□□ 0.17
SHKBP1-209ENST00000595803 KLHDC4Q8TBB5 520 aa16.1■□□□□ 0.17
SHKBP1-209ENST00000595803 RHPN1Q8TCX5 695 aa16.1■□□□□ 0.17
SHKBP1-209ENST00000595803 NLRP3Q96P20 1036 aa16.1■□□□□ 0.17
SHKBP1-209ENST00000595803 SIL1Q9H173 461 aa16.1■□□□□ 0.17
SHKBP1-209ENST00000595803 CARMIL3Q8ND23 1372 aa16.1■□□□□ 0.17
SHKBP1-209ENST00000595803 TNRC18O15417 2968 aaPredicted RBP16.1■□□□□ 0.17
SHKBP1-209ENST00000595803 HSPA8P11142 646 aaKnown RBP16.09■□□□□ 0.17
SHKBP1-209ENST00000595803 PDE4AP27815 886 aa16.09■□□□□ 0.17
SHKBP1-209ENST00000595803 CCDC152Q4G0S7 254 aa16.09■□□□□ 0.17
SHKBP1-209ENST00000595803 CHADLQ6NUI6 762 aa16.09■□□□□ 0.17
SHKBP1-209ENST00000595803 GREM2Q9H772 168 aa16.09■□□□□ 0.17
SHKBP1-209ENST00000595803 POTEIP0CG38 1075 aa16.08■□□□□ 0.16
SHKBP1-209ENST00000595803 POTEJP0CG39 1038 aa16.08■□□□□ 0.16
SHKBP1-209ENST00000595803 ITGA6P23229 1130 aa16.08■□□□□ 0.16
SHKBP1-209ENST00000595803 DDR1Q08345 913 aa16.08■□□□□ 0.16
SHKBP1-209ENST00000595803 CNBD1Q8NA66 436 aa16.08■□□□□ 0.16
SHKBP1-209ENST00000595803 ZNF594Q96JF6 807 aaPredicted RBP16.08■□□□□ 0.16
SHKBP1-209ENST00000595803 IL1RAPL2Q9NP60 686 aa16.08■□□□□ 0.16
SHKBP1-209ENST00000595803 EYA2O00167 538 aa16.07■□□□□ 0.16
SHKBP1-209ENST00000595803 ST5P78524 1137 aa16.07■□□□□ 0.16
SHKBP1-209ENST00000595803 SF3B3Q15393 1217 aaKnown RBP16.07■□□□□ 0.16
SHKBP1-209ENST00000595803 CLASRPQ8N2M8 674 aaKnown RBP16.07■□□□□ 0.16
SHKBP1-209ENST00000595803 CCDC24Q8N4L8 307 aa16.07■□□□□ 0.16
SHKBP1-209ENST00000595803 FBXO3Q9UK99 471 aa16.07■□□□□ 0.16
SHKBP1-209ENST00000595803 CCDC88AQ3V6T2 1871 aa16.06■□□□□ 0.16
SHKBP1-209ENST00000595803 CIAO1O76071 339 aa16.06■□□□□ 0.16
SHKBP1-209ENST00000595803 SASH1O94885 1247 aa16.06■□□□□ 0.16
SHKBP1-209ENST00000595803 IL15P40933 162 aaPredicted RBP16.06■□□□□ 0.16
SHKBP1-209ENST00000595803 PASKQ96RG2 1323 aa16.05■□□□□ 0.16
SHKBP1-209ENST00000595803 POLRMTO00411 1230 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-209ENST00000595803 PRR5LQ6MZQ0 368 aa16.05■□□□□ 0.16
SHKBP1-209ENST00000595803 LDHAL6AQ6ZMR3 332 aa16.05■□□□□ 0.16
SHKBP1-209ENST00000595803 DLEC1Q9Y238 1755 aa16.05■□□□□ 0.16
SHKBP1-209ENST00000595803 IFIT2P09913 472 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-209ENST00000595803 IGHMBP2P38935 993 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-209ENST00000595803 LRRC24Q50LG9 513 aa16.04■□□□□ 0.16
SHKBP1-209ENST00000595803 DPY19L2Q6NUT2 758 aa16.04■□□□□ 0.16
SHKBP1-209ENST00000595803 PLEKHM2Q8IWE5 1019 aa16.04■□□□□ 0.16
SHKBP1-209ENST00000595803 MPHOSPH8Q99549 860 aa16.04■□□□□ 0.16
SHKBP1-209ENST00000595803 CNNM1Q9NRU3 951 aa16.04■□□□□ 0.16
SHKBP1-209ENST00000595803 CEP126Q9P2H0 1117 aa16.04■□□□□ 0.16
SHKBP1-209ENST00000595803 NFKBIEO00221 500 aa16.03■□□□□ 0.16
SHKBP1-209ENST00000595803 TFCP2Q12800 502 aa16.03■□□□□ 0.16
SHKBP1-209ENST00000595803 ATG9AQ7Z3C6 839 aa16.03■□□□□ 0.16
SHKBP1-209ENST00000595803 CDC5LQ99459 802 aaKnown RBP16.03■□□□□ 0.16
SHKBP1-209ENST00000595803 PUS3Q9BZE2 481 aaKnown RBP16.03■□□□□ 0.16
SHKBP1-209ENST00000595803 SEC31BQ9NQW1 1179 aa16.03■□□□□ 0.16
SHKBP1-209ENST00000595803 MYH3P11055 1940 aa16.03■□□□□ 0.16
SHKBP1-209ENST00000595803 RTL9Q8NET4 1388 aa16.02■□□□□ 0.16
SHKBP1-209ENST00000595803 ABCC12Q96J65 1359 aa16.02■□□□□ 0.16
SHKBP1-209ENST00000595803 C3orf67Q6ZVT6 689 aa16.02■□□□□ 0.16
SHKBP1-209ENST00000595803 DDX46Q7L014 1031 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-209ENST00000595803 AACSQ86V21 672 aa16.02■□□□□ 0.16
SHKBP1-209ENST00000595803 ANKRD18AQ8IVF6 992 aa16.02■□□□□ 0.16
SHKBP1-209ENST00000595803 TMEM88BA6NKF7 163 aa16.01■□□□□ 0.15
SHKBP1-209ENST00000595803 OTUD7AQ8TE49 926 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-209ENST00000595803 GPR108Q9NPR9 543 aa16.01■□□□□ 0.15
SHKBP1-209ENST00000595803 AKAP2Q9Y2D5 859 aa16.01■□□□□ 0.15
SHKBP1-209ENST00000595803 RIPOR2Q9Y4F9 1068 aa16.01■□□□□ 0.15
SHKBP1-209ENST00000595803 DDX60Q8IY21 1712 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-209ENST00000595803 MX1P20591 662 aa16■□□□□ 0.15
SHKBP1-209ENST00000595803 PDE1AP54750 535 aa16■□□□□ 0.15
SHKBP1-209ENST00000595803 TNNI3KQ59H18 835 aa16■□□□□ 0.15
SHKBP1-209ENST00000595803 METTL24Q5JXM2 366 aa16■□□□□ 0.15
SHKBP1-209ENST00000595803 EAF2Q96CJ1 260 aaPredicted RBP16■□□□□ 0.15
SHKBP1-209ENST00000595803 GPATCH3Q96I76 525 aa16■□□□□ 0.15
SHKBP1-209ENST00000595803 CCDC8Q9H0W5 538 aaPredicted RBP16■□□□□ 0.15
SHKBP1-209ENST00000595803 OSBPL3Q9H4L5 887 aa16■□□□□ 0.15
SHKBP1-209ENST00000595803 FPGT-TNNI3KV9GXZ4 949 aa16■□□□□ 0.15
SHKBP1-209ENST00000595803 PDE4DIPQ5VU43 2346 aa16■□□□□ 0.15
SHKBP1-209ENST00000595803 MROH5Q6ZUA9 1318 aa15.99■□□□□ 0.15
SHKBP1-209ENST00000595803 RPS8P62241 208 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-209ENST00000595803 MAP2K1Q02750 393 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-209ENST00000595803 RPGRQ92834 1020 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-209ENST00000595803 RBM17Q96I25 401 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-209ENST00000595803 NEUROD6Q96NK8 337 aa15.99■□□□□ 0.15
SHKBP1-209ENST00000595803 BRIP1Q9BX63 1249 aa15.99■□□□□ 0.15
SHKBP1-209ENST00000595803 STAP2Q9UGK3 403 aa15.99■□□□□ 0.15
SHKBP1-209ENST00000595803 LAMB2P55268 1798 aa15.99■□□□□ 0.15
SHKBP1-209ENST00000595803 THSD7BQ9C0I4 1608 aa15.98■□□□□ 0.15
SHKBP1-209ENST00000595803 DICER1Q9UPY3 1922 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-209ENST00000595803 TTC22Q5TAA0 569 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms