RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 CXCL9Q07325 125 aa22.47■■□□□ 1.19
SHKBP1-204ENST00000594862 MRPL50Q8N5N7 158 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-204ENST00000594862 ZC3H12CQ9C0D7 883 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-204ENST00000594862 POLLQ9UGP5 575 aa22.47■■□□□ 1.19
SHKBP1-204ENST00000594862 UFL1O94874 794 aa22.46■■□□□ 1.19
SHKBP1-204ENST00000594862 CSF1RP07333 972 aa22.46■■□□□ 1.19
SHKBP1-204ENST00000594862 SLC4A10Q6U841 1118 aa22.46■■□□□ 1.19
SHKBP1-204ENST00000594862 C9orf78Q9NZ63 289 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-204ENST00000594862 SPEF2Q9C093 1822 aa22.45■■□□□ 1.19
SHKBP1-204ENST00000594862 ATP2B4P23634 1241 aa22.45■■□□□ 1.18
SHKBP1-204ENST00000594862 SCNN1DP51172 638 aa22.45■■□□□ 1.18
SHKBP1-204ENST00000594862 EAPPQ56P03 285 aaPredicted RBP22.45■■□□□ 1.18
SHKBP1-204ENST00000594862 CDCA7LQ96GN5 454 aa22.45■■□□□ 1.18
SHKBP1-204ENST00000594862 ITGA6P23229 1130 aa22.44■■□□□ 1.18
SHKBP1-204ENST00000594862 USP50Q70EL3 339 aaPredicted RBP22.44■■□□□ 1.18
SHKBP1-204ENST00000594862 SSH1Q8WYL5 1049 aa22.44■■□□□ 1.18
SHKBP1-204ENST00000594862 GPRC5DQ9NZD1 345 aa22.44■■□□□ 1.18
SHKBP1-204ENST00000594862 ANKRD18BA2A2Z9 1011 aa22.43■■□□□ 1.18
SHKBP1-204ENST00000594862 G3V3G9 751 aa22.43■■□□□ 1.18
SHKBP1-204ENST00000594862 FAM161AQ3B820 660 aa22.43■■□□□ 1.18
SHKBP1-204ENST00000594862 DCAF8Q5TAQ9 597 aa22.43■■□□□ 1.18
SHKBP1-204ENST00000594862 MPHOSPH8Q99549 860 aa22.43■■□□□ 1.18
SHKBP1-204ENST00000594862 BCL2L13Q9BXK5 485 aa22.43■■□□□ 1.18
SHKBP1-204ENST00000594862 SMC4Q9NTJ3 1288 aa22.43■■□□□ 1.18
SHKBP1-204ENST00000594862 CLEC11AQ9Y240 323 aa22.43■■□□□ 1.18
SHKBP1-204ENST00000594862 RIMBP2O15034 1052 aa22.42■■□□□ 1.18
SHKBP1-204ENST00000594862 ECE2O60344 883 aa22.42■■□□□ 1.18
SHKBP1-204ENST00000594862 MIER1Q8N108 512 aa22.42■■□□□ 1.18
SHKBP1-204ENST00000594862 ANKRD2Q9GZV1 360 aa22.42■■□□□ 1.18
SHKBP1-204ENST00000594862 ADARB2Q9NS39 739 aaKnown RBP22.42■■□□□ 1.18
SHKBP1-204ENST00000594862 MED23Q9ULK4 1368 aa22.41■■□□□ 1.18
SHKBP1-204ENST00000594862 RAD17O75943 681 aa22.41■■□□□ 1.18
SHKBP1-204ENST00000594862 POTEIP0CG38 1075 aa22.41■■□□□ 1.18
SHKBP1-204ENST00000594862 POTEJP0CG39 1038 aa22.41■■□□□ 1.18
SHKBP1-204ENST00000594862 RPS12P25398 132 aaKnown RBP22.41■■□□□ 1.18
SHKBP1-204ENST00000594862 GMPSP49915 693 aaPredicted RBP22.41■■□□□ 1.18
SHKBP1-204ENST00000594862 IFIT5Q13325 482 aaKnown RBP22.41■■□□□ 1.18
SHKBP1-204ENST00000594862 COL13A1Q5TAT6 717 aaPredicted RBP22.41■■□□□ 1.18
SHKBP1-204ENST00000594862 DBNDD1Q9H9R9 158 aa22.41■■□□□ 1.18
SHKBP1-204ENST00000594862 MINPP1Q9UNW1 487 aa22.41■■□□□ 1.18
SHKBP1-204ENST00000594862 YDJCA8MPS7 323 aa22.4■■□□□ 1.18
SHKBP1-204ENST00000594862 UTYO14607 1347 aa22.39■■□□□ 1.18
SHKBP1-204ENST00000594862 EPS15P42566 896 aa22.39■■□□□ 1.17
SHKBP1-204ENST00000594862 FOXO4P98177 505 aa22.39■■□□□ 1.17
SHKBP1-204ENST00000594862 DPF2Q92785 391 aa22.39■■□□□ 1.17
SHKBP1-204ENST00000594862 LEMD3Q9Y2U8 911 aa22.39■■□□□ 1.17
SHKBP1-204ENST00000594862 CHMP3Q9Y3E7 222 aa22.39■■□□□ 1.17
SHKBP1-204ENST00000594862 ZNF609O15014 1411 aa22.39■■□□□ 1.17
SHKBP1-204ENST00000594862 CCT4P50991 539 aaKnown RBP22.38■■□□□ 1.17
SHKBP1-204ENST00000594862 BRPF1P55201 1214 aaPredicted RBP22.38■■□□□ 1.17
SHKBP1-204ENST00000594862 CCDC57Q2TAC2 916 aa22.38■■□□□ 1.17
SHKBP1-204ENST00000594862 PASKQ96RG2 1323 aa22.37■■□□□ 1.17
SHKBP1-204ENST00000594862 PSME4Q14997 1843 aa22.37■■□□□ 1.17
SHKBP1-204ENST00000594862 H7C1D1 291 aa22.37■■□□□ 1.17
SHKBP1-204ENST00000594862 DOK7Q18PE1 504 aa22.37■■□□□ 1.17
SHKBP1-204ENST00000594862 LMBR1LQ6UX01 489 aa22.37■■□□□ 1.17
SHKBP1-204ENST00000594862 PODNQ7Z5L7 613 aa22.37■■□□□ 1.17
SHKBP1-204ENST00000594862 CREBZFQ9NS37 354 aa22.37■■□□□ 1.17
SHKBP1-204ENST00000594862 KIF16BQ96L93 1317 aa22.36■■□□□ 1.17
SHKBP1-204ENST00000594862 PSMD14O00487 310 aa22.36■■□□□ 1.17
SHKBP1-204ENST00000594862 TAF7LQ5H9L4 462 aa22.36■■□□□ 1.17
SHKBP1-204ENST00000594862 KCNJ4P48050 445 aa22.35■■□□□ 1.17
SHKBP1-204ENST00000594862 CNTROBQ8N137 903 aa22.35■■□□□ 1.17
SHKBP1-204ENST00000594862 ZC3H15Q8WU90 426 aaKnown RBP22.35■■□□□ 1.17
SHKBP1-204ENST00000594862 GPR101Q96P66 508 aaPredicted RBP22.35■■□□□ 1.17
SHKBP1-204ENST00000594862 API5Q9BZZ5 524 aaKnown RBP22.35■■□□□ 1.17
SHKBP1-204ENST00000594862 ZNF804BA4D1E1 1349 aa22.34■■□□□ 1.17
SHKBP1-204ENST00000594862 ITGBL1O95965 494 aaPredicted RBP22.34■■□□□ 1.17
SHKBP1-204ENST00000594862 CNOT7Q9UIV1 285 aaKnown RBP22.34■■□□□ 1.17
SHKBP1-204ENST00000594862 NBPF7P0C2Y1 421 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-204ENST00000594862 HNRNPUQ00839 825 aaKnown RBP eCLIP22.33■■□□□ 1.17
SHKBP1-204ENST00000594862 CHRNDQ07001 517 aa22.33■■□□□ 1.17
SHKBP1-204ENST00000594862 MAP1SQ66K74 1059 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-204ENST00000594862 MICALL2Q8IY33 904 aa22.33■■□□□ 1.17
SHKBP1-204ENST00000594862 COA1Q9GZY4 146 aa22.33■■□□□ 1.17
SHKBP1-204ENST00000594862 A0A1B0GUL6 1792 aa22.33■■□□□ 1.16
SHKBP1-204ENST00000594862 SCN9AQ15858 1988 aa22.32■■□□□ 1.16
SHKBP1-204ENST00000594862 VIL1P09327 827 aaKnown RBP22.32■■□□□ 1.16
SHKBP1-204ENST00000594862 EPHA10Q5JZY3 1008 aa22.32■■□□□ 1.16
SHKBP1-204ENST00000594862 AGBL3Q8NEM8 1001 aa22.32■■□□□ 1.16
SHKBP1-204ENST00000594862 HDAC5Q9UQL6 1122 aa22.32■■□□□ 1.16
SHKBP1-204ENST00000594862 TMEM88BA6NKF7 163 aa22.31■■□□□ 1.16
SHKBP1-204ENST00000594862 RARSP54136 660 aaKnown RBP22.31■■□□□ 1.16
SHKBP1-204ENST00000594862 RABL6Q3YEC7 729 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-204ENST00000594862 LDHAL6AQ6ZMR3 332 aa22.31■■□□□ 1.16
SHKBP1-204ENST00000594862 SUCLG2Q96I99 432 aa22.31■■□□□ 1.16
SHKBP1-204ENST00000594862 MYO3BQ8WXR4 1341 aa22.31■■□□□ 1.16
SHKBP1-204ENST00000594862 USP17L3A6NCW0 530 aa22.3■■□□□ 1.16
SHKBP1-204ENST00000594862 USP17L4A6NCW7 530 aa22.3■■□□□ 1.16
SHKBP1-204ENST00000594862 RSBN1LQ6PCB5 846 aaPredicted RBP22.3■■□□□ 1.16
SHKBP1-204ENST00000594862 USP17L1Q7RTZ2 530 aa22.3■■□□□ 1.16
SHKBP1-204ENST00000594862 ARHGAP45Q92619 1136 aa22.3■■□□□ 1.16
SHKBP1-204ENST00000594862 CNNM1Q9NRU3 951 aa22.3■■□□□ 1.16
SHKBP1-204ENST00000594862 PGAP2Q9UHJ9 254 aa22.3■■□□□ 1.16
SHKBP1-204ENST00000594862 ZBTB12Q9Y330 459 aaPredicted RBP22.3■■□□□ 1.16
SHKBP1-204ENST00000594862 C15orf52Q6ZUT6 534 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-204ENST00000594862 NOB1Q9ULX3 412 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-204ENST00000594862 IPO8O15397 1037 aaKnown RBP22.28■■□□□ 1.16
SHKBP1-204ENST00000594862 MMP14P50281 582 aa22.28■■□□□ 1.16
SHKBP1-204ENST00000594862 KAZALD1Q96I82 304 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms