RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 USP48Q86UV5 1035 aa16.1■□□□□ 0.17
UPF1-203ENST00000594504 TSR2Q969E8 191 aaKnown RBP16.1■□□□□ 0.17
UPF1-203ENST00000594504 PCNTO95613 3336 aa16.1■□□□□ 0.17
UPF1-203ENST00000594504 PCCAP05165 728 aaPredicted RBP16.09■□□□□ 0.17
UPF1-203ENST00000594504 ECE1P42892 770 aa16.09■□□□□ 0.17
UPF1-203ENST00000594504 CALD1Q05682 793 aaKnown RBP16.09■□□□□ 0.17
UPF1-203ENST00000594504 TBC1D10BQ4KMP7 808 aaPredicted RBP16.09■□□□□ 0.17
UPF1-203ENST00000594504 NCBP3Q53F19 620 aaKnown RBP16.09■□□□□ 0.17
UPF1-203ENST00000594504 METTL22Q9BUU2 404 aaPredicted RBP16.09■□□□□ 0.17
UPF1-203ENST00000594504 MAP3K2Q9Y2U5 619 aa16.09■□□□□ 0.17
UPF1-203ENST00000594504 RTL9Q8NET4 1388 aa16.09■□□□□ 0.17
UPF1-203ENST00000594504 POLR2AP24928 1970 aaKnown RBP16.08■□□□□ 0.16
UPF1-203ENST00000594504 PDE8AO60658 829 aa16.08■□□□□ 0.16
UPF1-203ENST00000594504 CCDC27Q2M243 656 aa16.08■□□□□ 0.16
UPF1-203ENST00000594504 CCDC30Q5VVM6 783 aa16.08■□□□□ 0.16
UPF1-203ENST00000594504 CDC37L1Q7L3B6 337 aa16.08■□□□□ 0.16
UPF1-203ENST00000594504 SAPCD2Q86UD0 394 aa16.08■□□□□ 0.16
UPF1-203ENST00000594504 CCDC191Q8NCU4 936 aa16.08■□□□□ 0.16
UPF1-203ENST00000594504 ZC3H15Q8WU90 426 aaKnown RBP16.08■□□□□ 0.16
UPF1-203ENST00000594504 EYA3Q99504 573 aa16.08■□□□□ 0.16
UPF1-203ENST00000594504 CWC25Q9NXE8 425 aaPredicted RBP16.08■□□□□ 0.16
UPF1-203ENST00000594504 TSKSQ9UJT2 592 aa16.08■□□□□ 0.16
UPF1-203ENST00000594504 CDHR2Q9BYE9 1310 aa16.08■□□□□ 0.16
UPF1-203ENST00000594504 DPF2Q92785 391 aa16.07■□□□□ 0.16
UPF1-203ENST00000594504 ZC3H12CQ9C0D7 883 aaKnown RBP16.07■□□□□ 0.16
UPF1-203ENST00000594504 ANKIB1Q9P2G1 1089 aa16.07■□□□□ 0.16
UPF1-203ENST00000594504 PI4KAP2A4QPH2 592 aa16.06■□□□□ 0.16
UPF1-203ENST00000594504 WTIPA6NIX2 430 aaPredicted RBP16.06■□□□□ 0.16
UPF1-203ENST00000594504 UFL1O94874 794 aa16.06■□□□□ 0.16
UPF1-203ENST00000594504 IGKV5-2P06315 115 aa16.06■□□□□ 0.16
UPF1-203ENST00000594504 CCDC152Q4G0S7 254 aa16.06■□□□□ 0.16
UPF1-203ENST00000594504 G2E3Q7L622 706 aa16.06■□□□□ 0.16
UPF1-203ENST00000594504 PI4KAP1Q8N8J0 262 aa16.06■□□□□ 0.16
UPF1-203ENST00000594504 PODXL2Q9NZ53 605 aa16.06■□□□□ 0.16
UPF1-203ENST00000594504 SCN9AQ15858 1988 aa16.06■□□□□ 0.16
UPF1-203ENST00000594504 G3V3G9 751 aa16.05■□□□□ 0.16
UPF1-203ENST00000594504 DDX58O95786 925 aaKnown RBP16.05■□□□□ 0.16
UPF1-203ENST00000594504 DCAF8Q5TAQ9 597 aa16.05■□□□□ 0.16
UPF1-203ENST00000594504 KSR2Q6VAB6 950 aa16.05■□□□□ 0.16
UPF1-203ENST00000594504 GGA1Q9UJY5 639 aa16.05■□□□□ 0.16
UPF1-203ENST00000594504 ASTN2O75129 1339 aaPredicted RBP16.04■□□□□ 0.16
UPF1-203ENST00000594504 VIL1P09327 827 aaKnown RBP16.04■□□□□ 0.16
UPF1-203ENST00000594504 CWF19L2Q2TBE0 894 aaKnown RBP16.04■□□□□ 0.16
UPF1-203ENST00000594504 WWC1Q8IX03 1113 aa16.04■□□□□ 0.16
UPF1-203ENST00000594504 MIER1Q8N108 512 aa16.04■□□□□ 0.16
UPF1-203ENST00000594504 ZIC5Q96T25 663 aa16.04■□□□□ 0.16
UPF1-203ENST00000594504 ADM5C9JUS6 153 aa16.03■□□□□ 0.16
UPF1-203ENST00000594504 HSP90B1P14625 803 aaKnown RBP16.03■□□□□ 0.16
UPF1-203ENST00000594504 MAP2K2P36507 400 aa16.03■□□□□ 0.16
UPF1-203ENST00000594504 ANKRD18AQ8IVF6 992 aa16.03■□□□□ 0.16
UPF1-203ENST00000594504 BEGAINQ9BUH8 593 aa16.03■□□□□ 0.16
UPF1-203ENST00000594504 SALL2Q9Y467 1007 aaPredicted RBP16.03■□□□□ 0.16
UPF1-203ENST00000594504 THSD7BQ9C0I4 1608 aa16.03■□□□□ 0.16
UPF1-203ENST00000594504 SLC4A2P04920 1241 aa16.02■□□□□ 0.16
UPF1-203ENST00000594504 RPS12P25398 132 aaKnown RBP16.02■□□□□ 0.16
UPF1-203ENST00000594504 TWISTNBQ3B726 338 aaPredicted RBP16.02■□□□□ 0.16
UPF1-203ENST00000594504 KRT26Q7Z3Y9 468 aa16.02■□□□□ 0.16
UPF1-203ENST00000594504 TTLL11Q8NHH1 800 aa16.02■□□□□ 0.16
UPF1-203ENST00000594504 DCPSQ96C86 337 aaKnown RBP16.02■□□□□ 0.16
UPF1-203ENST00000594504 CTSWP56202 376 aa16.01■□□□□ 0.15
UPF1-203ENST00000594504 HUNKP57058 714 aa16.01■□□□□ 0.15
UPF1-203ENST00000594504 KIF4BQ2VIQ3 1234 aa16.01■□□□□ 0.15
UPF1-203ENST00000594504 HHIPL1Q96JK4 782 aa16.01■□□□□ 0.15
UPF1-203ENST00000594504 STK31Q9BXU1 1019 aa16.01■□□□□ 0.15
UPF1-203ENST00000594504 GREM2Q9H772 168 aa16.01■□□□□ 0.15
UPF1-203ENST00000594504 IL16Q14005 1332 aa16■□□□□ 0.15
UPF1-203ENST00000594504 NEURL1BA8MQ27 555 aa16■□□□□ 0.15
UPF1-203ENST00000594504 ATP2B4P23634 1241 aa16■□□□□ 0.15
UPF1-203ENST00000594504 ABHD8Q96I13 439 aa16■□□□□ 0.15
UPF1-203ENST00000594504 MINPP1Q9UNW1 487 aa16■□□□□ 0.15
UPF1-203ENST00000594504 SCAF8Q9UPN6 1271 aaKnown RBP16■□□□□ 0.15
UPF1-203ENST00000594504 SPEF2Q9C093 1822 aa16■□□□□ 0.15
UPF1-203ENST00000594504 XDHP47989 1333 aa15.99■□□□□ 0.15
UPF1-203ENST00000594504 H7C1W4 665 aa15.99■□□□□ 0.15
UPF1-203ENST00000594504 NEXNQ0ZGT2 675 aa15.99■□□□□ 0.15
UPF1-203ENST00000594504 RSBN1LQ6PCB5 846 aaPredicted RBP15.99■□□□□ 0.15
UPF1-203ENST00000594504 CHMP4AQ9BY43 222 aa15.99■□□□□ 0.15
UPF1-203ENST00000594504 GBA2Q9HCG7 927 aaPredicted RBP15.99■□□□□ 0.15
UPF1-203ENST00000594504 GGA3Q9NZ52 723 aa15.99■□□□□ 0.15
UPF1-203ENST00000594504 SCARF1Q14162 830 aa15.98■□□□□ 0.15
UPF1-203ENST00000594504 UBE3BQ7Z3V4 1068 aa15.98■□□□□ 0.15
UPF1-203ENST00000594504 WDR63Q8IWG1 891 aa15.98■□□□□ 0.15
UPF1-203ENST00000594504 CDC5LQ99459 802 aaKnown RBP15.98■□□□□ 0.15
UPF1-203ENST00000594504 MXD3Q9BW11 206 aa15.98■□□□□ 0.15
UPF1-203ENST00000594504 FAM155AB1AL88 458 aaPredicted RBP15.97■□□□□ 0.15
UPF1-203ENST00000594504 ANGEL2Q5VTE6 544 aaKnown RBP15.97■□□□□ 0.15
UPF1-203ENST00000594504 RGMBQ6NW40 437 aa15.97■□□□□ 0.15
UPF1-203ENST00000594504 TXNRD3Q86VQ6 643 aa15.97■□□□□ 0.15
UPF1-203ENST00000594504 C2orf69Q8N8R5 385 aa15.97■□□□□ 0.15
UPF1-203ENST00000594504 AGBL3Q8NEM8 1001 aa15.97■□□□□ 0.15
UPF1-203ENST00000594504 GMLQ99445 158 aa15.97■□□□□ 0.15
UPF1-203ENST00000594504 BSDC1Q9NW68 430 aaPredicted RBP15.97■□□□□ 0.15
UPF1-203ENST00000594504 MYH3P11055 1940 aa15.97■□□□□ 0.15
UPF1-203ENST00000594504 USP17L3A6NCW0 530 aa15.96■□□□□ 0.15
UPF1-203ENST00000594504 USP17L4A6NCW7 530 aa15.96■□□□□ 0.15
UPF1-203ENST00000594504 CCT4P50991 539 aaKnown RBP15.96■□□□□ 0.15
UPF1-203ENST00000594504 BRPF1P55201 1214 aaPredicted RBP15.96■□□□□ 0.15
UPF1-203ENST00000594504 ZNF280AP59817 542 aaPredicted RBP15.96■□□□□ 0.15
UPF1-203ENST00000594504 FLIIQ13045 1269 aa15.96■□□□□ 0.15
UPF1-203ENST00000594504 GCKRQ14397 625 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms