RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 DOK7Q18PE1 504 aa14.49□□□□□ -0.09
VPS4B-202ENST00000588059 PRPF38BQ5VTL8 546 aaKnown RBP14.49□□□□□ -0.09
VPS4B-202ENST00000588059 SULF1Q8IWU6 871 aa14.49□□□□□ -0.09
VPS4B-202ENST00000588059 CDCA5Q96FF9 252 aa14.49□□□□□ -0.09
VPS4B-202ENST00000588059 ZNF609O15014 1411 aa14.49□□□□□ -0.09
VPS4B-202ENST00000588059 RASAL3Q86YV0 1011 aa14.48□□□□□ -0.09
VPS4B-202ENST00000588059 TBC1D16Q8TBP0 767 aa14.48□□□□□ -0.09
VPS4B-202ENST00000588059 FAM89AQ96GI7 184 aa14.48□□□□□ -0.09
VPS4B-202ENST00000588059 EYA3Q99504 573 aa14.48□□□□□ -0.09
VPS4B-202ENST00000588059 PNNQ9H307 717 aaKnown RBP14.48□□□□□ -0.09
VPS4B-202ENST00000588059 VIL1P09327 827 aaKnown RBP14.47□□□□□ -0.09
VPS4B-202ENST00000588059 RIPK4P57078 832 aa14.47□□□□□ -0.09
VPS4B-202ENST00000588059 KRT24Q2M2I5 525 aa14.47□□□□□ -0.09
VPS4B-202ENST00000588059 ISCA1Q9BUE6 129 aa14.47□□□□□ -0.09
VPS4B-202ENST00000588059 CHPF2Q9P2E5 772 aa14.47□□□□□ -0.09
VPS4B-202ENST00000588059 PLBD2Q8NHP8 589 aa14.46□□□□□ -0.09
VPS4B-202ENST00000588059 HPS5Q9UPZ3 1129 aa14.46□□□□□ -0.09
VPS4B-202ENST00000588059 ATP5J2-PTCD1G3V325 749 aa14.45□□□□□ -0.1
VPS4B-202ENST00000588059 ZNF280AP59817 542 aaPredicted RBP14.45□□□□□ -0.1
VPS4B-202ENST00000588059 ANGEL2Q5VTE6 544 aaKnown RBP14.45□□□□□ -0.1
VPS4B-202ENST00000588059 REM2Q8IYK8 340 aaPredicted RBP14.45□□□□□ -0.1
VPS4B-202ENST00000588059 TMPOP42166 694 aaKnown RBP14.44□□□□□ -0.1
VPS4B-202ENST00000588059 RPS8P62241 208 aaKnown RBP14.44□□□□□ -0.1
VPS4B-202ENST00000588059 FKBP1BP68106 108 aa14.44□□□□□ -0.1
VPS4B-202ENST00000588059 LMOD3Q0VAK6 560 aa14.44□□□□□ -0.1
VPS4B-202ENST00000588059 RTL5Q5HYW3 569 aaPredicted RBP14.44□□□□□ -0.1
VPS4B-202ENST00000588059 ZC3H12CQ9C0D7 883 aaKnown RBP14.44□□□□□ -0.1
VPS4B-202ENST00000588059 PODXL2Q9NZ53 605 aa14.44□□□□□ -0.1
VPS4B-202ENST00000588059 ZNF646O15015 1829 aaPredicted RBP14.43□□□□□ -0.1
VPS4B-202ENST00000588059 IRS4O14654 1257 aaPredicted RBP14.43□□□□□ -0.1
VPS4B-202ENST00000588059 UFL1O94874 794 aa14.43□□□□□ -0.1
VPS4B-202ENST00000588059 SCARF1Q14162 830 aa14.43□□□□□ -0.1
VPS4B-202ENST00000588059 RSBN1LQ6PCB5 846 aaPredicted RBP14.43□□□□□ -0.1
VPS4B-202ENST00000588059 ANKRD13DQ6ZTN6 518 aa14.43□□□□□ -0.1
VPS4B-202ENST00000588059 AGBL3Q8NEM8 1001 aa14.43□□□□□ -0.1
VPS4B-202ENST00000588059 PITPNM2Q9BZ72 1349 aa14.42□□□□□ -0.1
VPS4B-202ENST00000588059 CHL1O00533 1208 aa14.42□□□□□ -0.1
VPS4B-202ENST00000588059 PKN2Q16513 984 aaKnown RBP14.42□□□□□ -0.1
VPS4B-202ENST00000588059 HDGFL1Q5TGJ6 251 aa14.42□□□□□ -0.1
VPS4B-202ENST00000588059 MOB2Q70IA6 237 aa14.42□□□□□ -0.1
VPS4B-202ENST00000588059 ZNF296Q8WUU4 475 aaPredicted RBP14.42□□□□□ -0.1
VPS4B-202ENST00000588059 GMLQ99445 158 aa14.42□□□□□ -0.1
VPS4B-202ENST00000588059 SEC31BQ9NQW1 1179 aa14.42□□□□□ -0.1
VPS4B-202ENST00000588059 G3V3G9 751 aa14.41□□□□□ -0.1
VPS4B-202ENST00000588059 TRIM28Q13263 835 aaKnown RBP14.41□□□□□ -0.1
VPS4B-202ENST00000588059 DCAF8Q5TAQ9 597 aa14.41□□□□□ -0.1
VPS4B-202ENST00000588059 ANKIB1Q9P2G1 1089 aa14.41□□□□□ -0.1
VPS4B-202ENST00000588059 GGA1Q9UJY5 639 aa14.41□□□□□ -0.1
VPS4B-202ENST00000588059 TBC1D8O95759 1140 aa14.4□□□□□ -0.1
VPS4B-202ENST00000588059 HOXB7P09629 217 aa14.4□□□□□ -0.1
VPS4B-202ENST00000588059 MYOZ2Q9NPC6 264 aa14.4□□□□□ -0.1
VPS4B-202ENST00000588059 DBF4Q9UBU7 674 aaPredicted RBP14.4□□□□□ -0.1
VPS4B-202ENST00000588059 HDAC9Q9UKV0 1011 aa14.4□□□□□ -0.1
VPS4B-202ENST00000588059 SCAF8Q9UPN6 1271 aaKnown RBP14.4□□□□□ -0.1
VPS4B-202ENST00000588059 SPEF2Q9C093 1822 aa14.39□□□□□ -0.11
VPS4B-202ENST00000588059 UBE2Q2LH0YL09 131 aa14.39□□□□□ -0.11
VPS4B-202ENST00000588059 USP17L8P0C7I0 530 aa14.39□□□□□ -0.11
VPS4B-202ENST00000588059 NOM1Q5C9Z4 860 aaKnown RBP14.39□□□□□ -0.11
VPS4B-202ENST00000588059 PRAMEF18Q5VWM3 479 aa14.38□□□□□ -0.11
VPS4B-202ENST00000588059 FBXO46Q6PJ61 603 aaPredicted RBP14.38□□□□□ -0.11
VPS4B-202ENST00000588059 ZBTB38Q8NAP3 1195 aaPredicted RBP14.38□□□□□ -0.11
VPS4B-202ENST00000588059 HYPKQ9NX55 129 aa14.38□□□□□ -0.11
VPS4B-202ENST00000588059 LAS1LQ9Y4W2 734 aaKnown RBP14.38□□□□□ -0.11
VPS4B-202ENST00000588059 USP17L3A6NCW0 530 aa14.37□□□□□ -0.11
VPS4B-202ENST00000588059 USP17L4A6NCW7 530 aa14.37□□□□□ -0.11
VPS4B-202ENST00000588059 GPR25O00155 361 aa14.37□□□□□ -0.11
VPS4B-202ENST00000588059 TM4SF4P48230 202 aa14.37□□□□□ -0.11
VPS4B-202ENST00000588059 NEUROD2Q15784 382 aa14.37□□□□□ -0.11
VPS4B-202ENST00000588059 USP17L1Q7RTZ2 530 aa14.37□□□□□ -0.11
VPS4B-202ENST00000588059 TRIM35Q9UPQ4 493 aa14.37□□□□□ -0.11
VPS4B-202ENST00000588059 XDHP47989 1333 aa14.37□□□□□ -0.11
VPS4B-202ENST00000588059 NBPF9Q3BBW0 867 aa14.36□□□□□ -0.11
VPS4B-202ENST00000588059 CCDC152Q4G0S7 254 aa14.36□□□□□ -0.11
VPS4B-202ENST00000588059 CCDC146Q8IYE0 955 aa14.36□□□□□ -0.11
VPS4B-202ENST00000588059 MYH3P11055 1940 aa14.36□□□□□ -0.11
VPS4B-202ENST00000588059 LAMB1P07942 1786 aa14.35□□□□□ -0.11
VPS4B-202ENST00000588059 HSP90B1P14625 803 aaKnown RBP14.35□□□□□ -0.11
VPS4B-202ENST00000588059 MKRN3Q13064 507 aaKnown RBP14.35□□□□□ -0.11
VPS4B-202ENST00000588059 TTLL12Q14166 644 aaPredicted RBP14.35□□□□□ -0.11
VPS4B-202ENST00000588059 DUSP27Q5VZP5 1158 aa14.35□□□□□ -0.11
VPS4B-202ENST00000588059 PODNQ7Z5L7 613 aa14.35□□□□□ -0.11
VPS4B-202ENST00000588059 CCDC85AQ96PX6 553 aaPredicted RBP14.35□□□□□ -0.11
VPS4B-202ENST00000588059 CFHR5Q9BXR6 569 aa14.35□□□□□ -0.11
VPS4B-202ENST00000588059 MED23Q9ULK4 1368 aa14.34□□□□□ -0.11
VPS4B-202ENST00000588059 RBBP6Q7Z6E9 1792 aaKnown RBP14.34□□□□□ -0.11
VPS4B-202ENST00000588059 WTIPA6NIX2 430 aaPredicted RBP14.34□□□□□ -0.11
VPS4B-202ENST00000588059 PDE8AO60658 829 aa14.34□□□□□ -0.11
VPS4B-202ENST00000588059 FKTNO75072 461 aa14.34□□□□□ -0.11
VPS4B-202ENST00000588059 PCCAP05165 728 aaPredicted RBP14.34□□□□□ -0.11
VPS4B-202ENST00000588059 ATP2B4P23634 1241 aa14.34□□□□□ -0.11
VPS4B-202ENST00000588059 GOLGA2Q08379 1002 aa14.34□□□□□ -0.11
VPS4B-202ENST00000588059 RIC3Q7Z5B4 369 aa14.34□□□□□ -0.11
VPS4B-202ENST00000588059 ANKRD18AQ8IVF6 992 aa14.34□□□□□ -0.11
VPS4B-202ENST00000588059 R3HDMLQ9H3Y0 253 aa14.34□□□□□ -0.11
VPS4B-202ENST00000588059 HTTP42858 3142 aa14.34□□□□□ -0.11
VPS4B-202ENST00000588059 WNT10BO00744 389 aa14.33□□□□□ -0.12
VPS4B-202ENST00000588059 SREBF2Q12772 1141 aa14.33□□□□□ -0.12
VPS4B-202ENST00000588059 DACT2Q5SW24 774 aa14.33□□□□□ -0.12
VPS4B-202ENST00000588059 CCDC191Q8NCU4 936 aa14.33□□□□□ -0.12
VPS4B-202ENST00000588059 JARID2Q92833 1246 aaPredicted RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms