RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 WASHC4Q2M389 1173 aa18.15■□□□□ 0.5
CIITA-211ENST00000576601 FBXO46Q6PJ61 603 aaPredicted RBP18.15■□□□□ 0.5
CIITA-211ENST00000576601 DDX46Q7L014 1031 aaKnown RBP18.15■□□□□ 0.5
CIITA-211ENST00000576601 SULF1Q8IWU6 871 aa18.15■□□□□ 0.5
CIITA-211ENST00000576601 POLLQ9UGP5 575 aa18.15■□□□□ 0.5
CIITA-211ENST00000576601 ANXA1P04083 346 aa18.14■□□□□ 0.49
CIITA-211ENST00000576601 NOM1Q5C9Z4 860 aaKnown RBP18.14■□□□□ 0.49
CIITA-211ENST00000576601 MOB2Q70IA6 237 aa18.14■□□□□ 0.49
CIITA-211ENST00000576601 PNISRQ8TF01 805 aaKnown RBP18.14■□□□□ 0.49
CIITA-211ENST00000576601 HDAC9Q9UKV0 1011 aa18.14■□□□□ 0.49
CIITA-211ENST00000576601 RIMBP2O15034 1052 aa18.13■□□□□ 0.49
CIITA-211ENST00000576601 FXR1P51114 621 aaKnown RBP eCLIP18.13■□□□□ 0.49
CIITA-211ENST00000576601 NFE2L2Q16236 605 aa18.13■□□□□ 0.49
CIITA-211ENST00000576601 TMC4Q7Z404 712 aa18.13■□□□□ 0.49
CIITA-211ENST00000576601 CELF1Q92879 486 aaKnown RBP18.13■□□□□ 0.49
CIITA-211ENST00000576601 SPEF2Q9C093 1822 aa18.12■□□□□ 0.49
CIITA-211ENST00000576601 GPR25O00155 361 aa18.12■□□□□ 0.49
CIITA-211ENST00000576601 VIL1P09327 827 aaKnown RBP18.12■□□□□ 0.49
CIITA-211ENST00000576601 FKBP1BP68106 108 aa18.12■□□□□ 0.49
CIITA-211ENST00000576601 DOK7Q18PE1 504 aa18.12■□□□□ 0.49
CIITA-211ENST00000576601 ANGEL2Q5VTE6 544 aaKnown RBP18.12■□□□□ 0.49
CIITA-211ENST00000576601 R3HDMLQ9H3Y0 253 aa18.12■□□□□ 0.49
CIITA-211ENST00000576601 SH3TC1Q8TE82 1336 aa18.12■□□□□ 0.49
CIITA-211ENST00000576601 ZNF280AP59817 542 aaPredicted RBP18.11■□□□□ 0.49
CIITA-211ENST00000576601 GPSM2P81274 684 aa18.11■□□□□ 0.49
CIITA-211ENST00000576601 NSFL1CQ9UNZ2 370 aaKnown RBP18.11■□□□□ 0.49
CIITA-211ENST00000576601 POTEFA5A3E0 1075 aa18.1■□□□□ 0.49
CIITA-211ENST00000576601 ZNF428Q96B54 188 aa18.1■□□□□ 0.49
CIITA-211ENST00000576601 TRMT112Q9UI30 125 aaKnown RBP18.1■□□□□ 0.49
CIITA-211ENST00000576601 SCAF8Q9UPN6 1271 aaKnown RBP18.1■□□□□ 0.49
CIITA-211ENST00000576601 UNC80Q8N2C7 3258 aa18.09■□□□□ 0.49
CIITA-211ENST00000576601 TM4SF4P48230 202 aa18.09■□□□□ 0.49
CIITA-211ENST00000576601 SCARF1Q14162 830 aa18.09■□□□□ 0.49
CIITA-211ENST00000576601 TBC1D16Q8TBP0 767 aa18.09■□□□□ 0.49
CIITA-211ENST00000576601 CFHR5Q9BXR6 569 aa18.09■□□□□ 0.49
CIITA-211ENST00000576601 PITPNM2Q9BZ72 1349 aa18.08■□□□□ 0.49
CIITA-211ENST00000576601 MAPK8IP3Q9UPT6 1336 aa18.08■□□□□ 0.49
CIITA-211ENST00000576601 ECM29Q5VYK3 1845 aa18.08■□□□□ 0.48
CIITA-211ENST00000576601 C6orf229H3BNL8 230 aa18.08■□□□□ 0.48
CIITA-211ENST00000576601 UBE2Q2LH0YL09 131 aa18.07■□□□□ 0.48
CIITA-211ENST00000576601 NEFMP07197 916 aa18.07■□□□□ 0.48
CIITA-211ENST00000576601 TCIRG1Q13488 830 aa18.07■□□□□ 0.48
CIITA-211ENST00000576601 HSP90AB3PQ58FF7 597 aa18.07■□□□□ 0.48
CIITA-211ENST00000576601 GMLQ99445 158 aa18.07■□□□□ 0.48
CIITA-211ENST00000576601 SF3B3Q15393 1217 aaKnown RBP18.06■□□□□ 0.48
CIITA-211ENST00000576601 COPS6Q7L5N1 327 aa18.06■□□□□ 0.48
CIITA-211ENST00000576601 XAGE3Q8WTP9 111 aa18.06■□□□□ 0.48
CIITA-211ENST00000576601 MYH3P11055 1940 aa18.06■□□□□ 0.48
CIITA-211ENST00000576601 FKTNO75072 461 aa18.05■□□□□ 0.48
CIITA-211ENST00000576601 EIF2S2P20042 333 aaKnown RBP18.05■□□□□ 0.48
CIITA-211ENST00000576601 PRAMEF18Q5VWM3 479 aa18.05■□□□□ 0.48
CIITA-211ENST00000576601 RSBN1LQ6PCB5 846 aaPredicted RBP18.05■□□□□ 0.48
CIITA-211ENST00000576601 EYA3Q99504 573 aa18.05■□□□□ 0.48
CIITA-211ENST00000576601 OTOFQ9HC10 1997 aa18.04■□□□□ 0.48
CIITA-211ENST00000576601 MKRN3Q13064 507 aaKnown RBP18.04■□□□□ 0.48
CIITA-211ENST00000576601 AGBL3Q8NEM8 1001 aa18.04■□□□□ 0.48
CIITA-211ENST00000576601 MYOZ2Q9NPC6 264 aa18.04■□□□□ 0.48
CIITA-211ENST00000576601 PODXL2Q9NZ53 605 aa18.04■□□□□ 0.48
CIITA-211ENST00000576601 AIMP1Q12904 312 aaKnown RBP18.03■□□□□ 0.48
CIITA-211ENST00000576601 OTOP1Q7RTM1 612 aa18.02■□□□□ 0.48
CIITA-211ENST00000576601 CCDC146Q8IYE0 955 aa18.02■□□□□ 0.48
CIITA-211ENST00000576601 FAM89AQ96GI7 184 aa18.02■□□□□ 0.48
CIITA-211ENST00000576601 TSPYL4Q9UJ04 414 aa18.02■□□□□ 0.48
CIITA-211ENST00000576601 RIPK4P57078 832 aa18.01■□□□□ 0.47
CIITA-211ENST00000576601 DDX10Q13206 875 aaKnown RBP18.01■□□□□ 0.47
CIITA-211ENST00000576601 NBPF9Q3BBW0 867 aa18.01■□□□□ 0.47
CIITA-211ENST00000576601 NECTIN2Q92692 538 aa18.01■□□□□ 0.47
CIITA-211ENST00000576601 ISCA1Q9BUE6 129 aa18.01■□□□□ 0.47
CIITA-211ENST00000576601 ZSWIM8A7E2V4 1837 aa18■□□□□ 0.47
CIITA-211ENST00000576601 UFL1O94874 794 aa18■□□□□ 0.47
CIITA-211ENST00000576601 USP17L8P0C7I0 530 aa18■□□□□ 0.47
CIITA-211ENST00000576601 TMPOP42166 694 aaKnown RBP18■□□□□ 0.47
CIITA-211ENST00000576601 SREBF2Q12772 1141 aa18■□□□□ 0.47
CIITA-211ENST00000576601 RALBP1Q15311 655 aa18■□□□□ 0.47
CIITA-211ENST00000576601 ZC3H12CQ9C0D7 883 aaKnown RBP18■□□□□ 0.47
CIITA-211ENST00000576601 MYBBP1AQ9BQG0 1328 aaKnown RBP17.99■□□□□ 0.47
CIITA-211ENST00000576601 RPS8P62241 208 aaKnown RBP17.99■□□□□ 0.47
CIITA-211ENST00000576601 KRT24Q2M2I5 525 aa17.99■□□□□ 0.47
CIITA-211ENST00000576601 TRIM17Q9Y577 477 aa17.99■□□□□ 0.47
CIITA-211ENST00000576601 LAMA2P24043 3122 aaKnown RBP17.99■□□□□ 0.47
CIITA-211ENST00000576601 SSC5DA1L4H1 1573 aa17.99■□□□□ 0.47
CIITA-211ENST00000576601 CAP1Q01518 475 aa17.98■□□□□ 0.47
CIITA-211ENST00000576601 PTPN12Q05209 780 aaKnown RBP17.98■□□□□ 0.47
CIITA-211ENST00000576601 INTS3Q68E01 1043 aaKnown RBP17.98■□□□□ 0.47
CIITA-211ENST00000576601 PNNQ9H307 717 aaKnown RBP17.98■□□□□ 0.47
CIITA-211ENST00000576601 SEC31BQ9NQW1 1179 aa17.98■□□□□ 0.47
CIITA-211ENST00000576601 COLQQ9Y215 455 aaPredicted RBP17.98■□□□□ 0.47
CIITA-211ENST00000576601 EN2P19622 333 aaPredicted RBP17.97■□□□□ 0.47
CIITA-211ENST00000576601 NEUROD2Q15784 382 aa17.97■□□□□ 0.47
CIITA-211ENST00000576601 RTL5Q5HYW3 569 aaPredicted RBP17.97■□□□□ 0.47
CIITA-211ENST00000576601 SPRYD7Q5W111 196 aa17.97■□□□□ 0.47
CIITA-211ENST00000576601 ARMC5Q96C12 935 aa17.97■□□□□ 0.47
CIITA-211ENST00000576601 VCANP13611 3396 aa17.96■□□□□ 0.47
CIITA-211ENST00000576601 ATP5J2-PTCD1G3V325 749 aa17.96■□□□□ 0.47
CIITA-211ENST00000576601 TTLL12Q14166 644 aaPredicted RBP17.96■□□□□ 0.47
CIITA-211ENST00000576601 LDLRAD1Q5T700 205 aa17.96■□□□□ 0.47
CIITA-211ENST00000576601 GGA1Q9UJY5 639 aa17.96■□□□□ 0.47
CIITA-211ENST00000576601 A0A1B0GUL6 1792 aa17.95■□□□□ 0.46
CIITA-211ENST00000576601 IGF2BP3O00425 579 aaKnown RBP eCLIP17.95■□□□□ 0.46
CIITA-211ENST00000576601 WNT10BO00744 389 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms