RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 TRIM11Q96F44 468 aa5.77□□□□□ -1.49
VPS39-212ENST00000570023 CHMP4AQ9BY43 222 aa5.77□□□□□ -1.49
VPS39-212ENST00000570023 FRRS1LQ9P0K9 344 aa5.77□□□□□ -1.49
VPS39-212ENST00000570023 PCSK2P16519 638 aa5.76□□□□□ -1.49
VPS39-212ENST00000570023 COL8A1P27658 744 aa5.76□□□□□ -1.49
VPS39-212ENST00000570023 USP5P45974 858 aa5.76□□□□□ -1.49
VPS39-212ENST00000570023 DNM1Q05193 864 aaKnown RBP5.76□□□□□ -1.49
VPS39-212ENST00000570023 TBC1D8BQ0IIM8 1120 aa5.76□□□□□ -1.49
VPS39-212ENST00000570023 ILDR2Q71H61 639 aa5.76□□□□□ -1.49
VPS39-212ENST00000570023 FAM35AQ86V20 835 aa5.76□□□□□ -1.49
VPS39-212ENST00000570023 GGNBP2Q9H3C7 697 aa5.76□□□□□ -1.49
VPS39-212ENST00000570023 SUV39H2Q9H5I1 410 aa5.76□□□□□ -1.49
VPS39-212ENST00000570023 ELP3Q9H9T3 547 aa5.76□□□□□ -1.49
VPS39-212ENST00000570023 ANO2Q9NQ90 1003 aa5.76□□□□□ -1.49
VPS39-212ENST00000570023 LOC102724428A0A0B4J2F2 783 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 LILRB5O75023 590 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 NID1P14543 1247 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 AFF1P51825 1210 aaKnown RBP5.75□□□□□ -1.49
VPS39-212ENST00000570023 SIK1P57059 783 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 ARHGAP4P98171 946 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 TTC39BQ5VTQ0 682 aaPredicted RBP5.75□□□□□ -1.49
VPS39-212ENST00000570023 PSAPL1Q6NUJ1 521 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 C8orf86Q6ZUL3 223 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 DCAF5Q96JK2 942 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 NAP1L5Q96NT1 182 aaPredicted RBP5.75□□□□□ -1.49
VPS39-212ENST00000570023 LPIN3Q9BQK8 851 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 TRAIPQ9BWF2 469 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 ABI2Q9NYB9 513 aaPredicted RBP5.75□□□□□ -1.49
VPS39-212ENST00000570023 NOP53Q9NZM5 478 aaKnown RBP5.75□□□□□ -1.49
VPS39-212ENST00000570023 POLIQ9UNA4 740 aa5.75□□□□□ -1.49
VPS39-212ENST00000570023 A0A0U1RQG5 324 aaPredicted RBP5.74□□□□□ -1.49
VPS39-212ENST00000570023 H3BRB1 525 aa5.74□□□□□ -1.49
VPS39-212ENST00000570023 RGS9O75916 674 aaPredicted RBP5.74□□□□□ -1.49
VPS39-212ENST00000570023 CPB1P15086 417 aa5.74□□□□□ -1.49
VPS39-212ENST00000570023 CDK11BP21127 795 aaKnown RBP5.74□□□□□ -1.49
VPS39-212ENST00000570023 MLLT1Q03111 559 aaPredicted RBP5.74□□□□□ -1.49
VPS39-212ENST00000570023 PERM1Q5SV97 790 aa5.74□□□□□ -1.49
VPS39-212ENST00000570023 GJD3Q8N144 294 aa5.74□□□□□ -1.49
VPS39-212ENST00000570023 PLVAPQ9BX97 442 aa5.74□□□□□ -1.49
VPS39-212ENST00000570023 TUT1Q9H6E5 874 aaKnown RBP5.74□□□□□ -1.49
VPS39-212ENST00000570023 JPH1Q9HDC5 661 aaPredicted RBP5.74□□□□□ -1.49
VPS39-212ENST00000570023 CCDC87Q9NVE4 849 aa5.74□□□□□ -1.49
VPS39-212ENST00000570023 SPDYE3A6NKU9 549 aa5.73□□□□□ -1.49
VPS39-212ENST00000570023 KIF4AO95239 1232 aa5.73□□□□□ -1.49
VPS39-212ENST00000570023 EHHADHQ08426 723 aa5.73□□□□□ -1.49
VPS39-212ENST00000570023 GRIK5Q16478 980 aa5.73□□□□□ -1.49
VPS39-212ENST00000570023 ZNF438Q7Z4V0 828 aa5.73□□□□□ -1.49
VPS39-212ENST00000570023 GLYCTKQ8IVS8 523 aa5.73□□□□□ -1.49
VPS39-212ENST00000570023 NUDT8Q8WV74 236 aa5.73□□□□□ -1.49
VPS39-212ENST00000570023 TMEM63CQ9P1W3 806 aa5.73□□□□□ -1.49
VPS39-212ENST00000570023 CNTN3Q9P232 1028 aa5.73□□□□□ -1.49
VPS39-212ENST00000570023 SOWAHDA6NJG2 315 aa5.72□□□□□ -1.49
VPS39-212ENST00000570023 J3QW42 95 aa5.72□□□□□ -1.49
VPS39-212ENST00000570023 RRP9O43818 475 aaKnown RBP5.72□□□□□ -1.49
VPS39-212ENST00000570023 HYAL2Q12891 473 aa5.72□□□□□ -1.49
VPS39-212ENST00000570023 C8orf34Q49A92 452 aa5.72□□□□□ -1.49
VPS39-212ENST00000570023 COL13A1Q5TAT6 717 aaPredicted RBP5.72□□□□□ -1.49
VPS39-212ENST00000570023 ELMSAN1Q6PJG2 1045 aa5.72□□□□□ -1.49
VPS39-212ENST00000570023 HFE2Q6ZVN8 426 aa5.72□□□□□ -1.49
VPS39-212ENST00000570023 TTC16Q8NEE8 873 aa5.72□□□□□ -1.49
VPS39-212ENST00000570023 NSUN5Q96P11 429 aaKnown RBP5.72□□□□□ -1.49
VPS39-212ENST00000570023 CITED4Q96RK1 184 aa5.72□□□□□ -1.49
VPS39-212ENST00000570023 SMG9Q9H0W8 520 aaKnown RBP5.72□□□□□ -1.49
VPS39-212ENST00000570023 KRBA1A5PL33 1030 aa5.71□□□□□ -1.5
VPS39-212ENST00000570023 GHRHP01286 108 aa5.71□□□□□ -1.5
VPS39-212ENST00000570023 CYP2E1P05181 493 aaPredicted RBP5.71□□□□□ -1.5
VPS39-212ENST00000570023 HMGB1P09429 215 aaKnown RBP5.71□□□□□ -1.5
VPS39-212ENST00000570023 EIF2AK2P19525 551 aaKnown RBP5.71□□□□□ -1.5
VPS39-212ENST00000570023 KCNA1Q09470 495 aa5.71□□□□□ -1.5
VPS39-212ENST00000570023 CEP120Q8N960 986 aa5.71□□□□□ -1.5
VPS39-212ENST00000570023 PMEPA1Q969W9 287 aa5.71□□□□□ -1.5
VPS39-212ENST00000570023 PLD4Q96BZ4 506 aa5.71□□□□□ -1.5
VPS39-212ENST00000570023 CHRDQ9H2X0 955 aa5.71□□□□□ -1.5
VPS39-212ENST00000570023 SALL4Q9UJQ4 1053 aa5.71□□□□□ -1.5
VPS39-212ENST00000570023 A6NHS1 94 aa5.7□□□□□ -1.5
VPS39-212ENST00000570023 TNFRSF21O75509 655 aa5.7□□□□□ -1.5
VPS39-212ENST00000570023 ITGB2P05107 769 aa5.7□□□□□ -1.5
VPS39-212ENST00000570023 SPATA31C1P0DKV0 1188 aa5.7□□□□□ -1.5
VPS39-212ENST00000570023 NCLP19338 710 aaKnown RBP5.7□□□□□ -1.5
VPS39-212ENST00000570023 MSL1Q68DK7 614 aa5.7□□□□□ -1.5
VPS39-212ENST00000570023 KCTD17Q8N5Z5 321 aa5.7□□□□□ -1.5
VPS39-212ENST00000570023 C1orf127Q8N9H9 656 aa5.7□□□□□ -1.5
VPS39-212ENST00000570023 IPO4Q8TEX9 1081 aaKnown RBP5.7□□□□□ -1.5
VPS39-212ENST00000570023 RBSNQ9H1K0 784 aa5.7□□□□□ -1.5
VPS39-212ENST00000570023 BRPF3Q9ULD4 1205 aa5.7□□□□□ -1.5
VPS39-212ENST00000570023 NDUFB5O43674 189 aa5.69□□□□□ -1.5
VPS39-212ENST00000570023 CES1P23141 567 aa5.69□□□□□ -1.5
VPS39-212ENST00000570023 BAG6P46379 1132 aa5.69□□□□□ -1.5
VPS39-212ENST00000570023 TRIM28Q13263 835 aaKnown RBP5.69□□□□□ -1.5
VPS39-212ENST00000570023 PLA2G4EQ3MJ16 856 aa5.69□□□□□ -1.5
VPS39-212ENST00000570023 PRRT3Q5FWE3 981 aa5.69□□□□□ -1.5
VPS39-212ENST00000570023 TRAPPC3LQ5T215 181 aa5.69□□□□□ -1.5
VPS39-212ENST00000570023 CACTIN-AS1Q8N1I8 211 aa5.69□□□□□ -1.5
VPS39-212ENST00000570023 DTWD1Q8N5C7 304 aa5.69□□□□□ -1.5
VPS39-212ENST00000570023 SNX29Q8TEQ0 813 aa5.69□□□□□ -1.5
VPS39-212ENST00000570023 SPACA7Q96KW9 195 aa5.69□□□□□ -1.5
VPS39-212ENST00000570023 A0A0A0MRY4 1105 aa5.68□□□□□ -1.5
VPS39-212ENST00000570023 PATL2C9JE40 543 aaKnown RBP5.68□□□□□ -1.5
VPS39-212ENST00000570023 IGHA1P01876 353 aa5.68□□□□□ -1.5
VPS39-212ENST00000570023 IGHA2P01877 340 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms