RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ZKSCAN2Q63HK3 967 aa12.44□□□□□ -0.42
CLN3-220ENST00000566040 DPP8Q6V1X1 898 aaPredicted RBP12.44□□□□□ -0.42
CLN3-220ENST00000566040 TXNRD3Q86VQ6 643 aa12.44□□□□□ -0.42
CLN3-220ENST00000566040 ANKRD18AQ8IVF6 992 aa12.44□□□□□ -0.42
CLN3-220ENST00000566040 KLHDC4Q8TBB5 520 aa12.44□□□□□ -0.42
CLN3-220ENST00000566040 ZNF526Q8TF50 670 aaPredicted RBP12.44□□□□□ -0.42
CLN3-220ENST00000566040 FRAT1Q92837 279 aaPredicted RBP12.44□□□□□ -0.42
CLN3-220ENST00000566040 GLTPD2A6NH11 291 aa12.43□□□□□ -0.42
CLN3-220ENST00000566040 HSP90B1P14625 803 aaKnown RBP12.43□□□□□ -0.42
CLN3-220ENST00000566040 GRIPAP1Q4V328 841 aa12.43□□□□□ -0.42
CLN3-220ENST00000566040 C20orf194Q5TEA3 1177 aa12.43□□□□□ -0.42
CLN3-220ENST00000566040 VGLL2Q8N8G2 317 aa12.43□□□□□ -0.42
CLN3-220ENST00000566040 PANK1Q8TE04 598 aa12.43□□□□□ -0.42
CLN3-220ENST00000566040 CDC5LQ99459 802 aaKnown RBP12.43□□□□□ -0.42
CLN3-220ENST00000566040 KCNQ5Q9NR82 932 aa12.43□□□□□ -0.42
CLN3-220ENST00000566040 LRRFIP2Q9Y608 721 aaKnown RBP12.43□□□□□ -0.42
CLN3-220ENST00000566040 ECM29Q5VYK3 1845 aa12.43□□□□□ -0.42
CLN3-220ENST00000566040 ZNF609O15014 1411 aa12.43□□□□□ -0.42
CLN3-220ENST00000566040 XDHP47989 1333 aa12.42□□□□□ -0.42
CLN3-220ENST00000566040 POLR2AP24928 1970 aaKnown RBP12.42□□□□□ -0.42
CLN3-220ENST00000566040 PPIP5K2O43314 1243 aa12.42□□□□□ -0.42
CLN3-220ENST00000566040 PLIN1O60240 522 aa12.42□□□□□ -0.42
CLN3-220ENST00000566040 DDNO94850 711 aaPredicted RBP12.42□□□□□ -0.42
CLN3-220ENST00000566040 L3MBTL3Q96JM7 780 aaPredicted RBP12.42□□□□□ -0.42
CLN3-220ENST00000566040 YTHDC1Q96MU7 727 aaKnown RBP12.42□□□□□ -0.42
CLN3-220ENST00000566040 RCAN3Q9UKA8 241 aa12.42□□□□□ -0.42
CLN3-220ENST00000566040 NSFL1CQ9UNZ2 370 aaKnown RBP12.42□□□□□ -0.42
CLN3-220ENST00000566040 RIPOR2Q9Y4F9 1068 aa12.42□□□□□ -0.42
CLN3-220ENST00000566040 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.42□□□□□ -0.42
CLN3-220ENST00000566040 MED23Q9ULK4 1368 aa12.42□□□□□ -0.42
CLN3-220ENST00000566040 CEP350Q5VT06 3117 aa12.42□□□□□ -0.42
CLN3-220ENST00000566040 ANKRD18BA2A2Z9 1011 aa12.41□□□□□ -0.42
CLN3-220ENST00000566040 PTPN12Q05209 780 aaKnown RBP12.41□□□□□ -0.42
CLN3-220ENST00000566040 CHRNDQ07001 517 aa12.41□□□□□ -0.42
CLN3-220ENST00000566040 MTX1Q13505 466 aa12.41□□□□□ -0.42
CLN3-220ENST00000566040 LRRC24Q50LG9 513 aa12.41□□□□□ -0.42
CLN3-220ENST00000566040 ATG9AQ7Z3C6 839 aa12.41□□□□□ -0.42
CLN3-220ENST00000566040 MYO5AQ9Y4I1 1855 aaKnown RBP12.4□□□□□ -0.42
CLN3-220ENST00000566040 SHTN1A0MZ66 631 aa12.4□□□□□ -0.42
CLN3-220ENST00000566040 ZBTB7BO15156 539 aaPredicted RBP12.4□□□□□ -0.42
CLN3-220ENST00000566040 UFL1O94874 794 aa12.4□□□□□ -0.42
CLN3-220ENST00000566040 POTEIP0CG38 1075 aa12.4□□□□□ -0.42
CLN3-220ENST00000566040 POTEJP0CG39 1038 aa12.4□□□□□ -0.42
CLN3-220ENST00000566040 SCNN1DP51172 638 aa12.4□□□□□ -0.42
CLN3-220ENST00000566040 CXCL9Q07325 125 aa12.4□□□□□ -0.42
CLN3-220ENST00000566040 IFIT5Q13325 482 aaKnown RBP12.4□□□□□ -0.42
CLN3-220ENST00000566040 LARGE2Q8N3Y3 721 aa12.4□□□□□ -0.42
CLN3-220ENST00000566040 HELBQ8NG08 1087 aaPredicted RBP12.4□□□□□ -0.42
CLN3-220ENST00000566040 VPS33BQ9H267 617 aa12.4□□□□□ -0.42
CLN3-220ENST00000566040 AKAP11Q9UKA4 1901 aa12.4□□□□□ -0.42
CLN3-220ENST00000566040 COL1A1P02452 1464 aaPredicted RBP12.4□□□□□ -0.43
CLN3-220ENST00000566040 PNMA6EA0A0J9YXQ4 647 aa12.39□□□□□ -0.43
CLN3-220ENST00000566040 IPO8O15397 1037 aaKnown RBP12.39□□□□□ -0.43
CLN3-220ENST00000566040 TAF5LO75529 589 aa12.39□□□□□ -0.43
CLN3-220ENST00000566040 UBTFL1P0CB47 393 aaPredicted RBP12.39□□□□□ -0.43
CLN3-220ENST00000566040 DZIP1LQ8IYY4 767 aaKnown RBP12.39□□□□□ -0.43
CLN3-220ENST00000566040 DBNDD1Q9H9R9 158 aa12.39□□□□□ -0.43
CLN3-220ENST00000566040 GPBP1L1Q9HC44 474 aaPredicted RBP12.39□□□□□ -0.43
CLN3-220ENST00000566040 CHMP3Q9Y3E7 222 aa12.39□□□□□ -0.43
CLN3-220ENST00000566040 RIMBP2O15034 1052 aa12.38□□□□□ -0.43
CLN3-220ENST00000566040 ECE2O60344 883 aa12.38□□□□□ -0.43
CLN3-220ENST00000566040 IGHMBP2P38935 993 aaKnown RBP12.38□□□□□ -0.43
CLN3-220ENST00000566040 DOK7Q18PE1 504 aa12.38□□□□□ -0.43
CLN3-220ENST00000566040 WASHC4Q2M389 1173 aa12.38□□□□□ -0.43
CLN3-220ENST00000566040 C15orf52Q6ZUT6 534 aaKnown RBP12.38□□□□□ -0.43
CLN3-220ENST00000566040 SUPT20HQ8NEM7 779 aa12.38□□□□□ -0.43
CLN3-220ENST00000566040 C1orf115Q9H7X2 142 aa12.38□□□□□ -0.43
CLN3-220ENST00000566040 RRAGCQ9HB90 399 aa12.38□□□□□ -0.43
CLN3-220ENST00000566040 GGA1Q9UJY5 639 aa12.38□□□□□ -0.43
CLN3-220ENST00000566040 ZNRF3Q9ULT6 936 aa12.38□□□□□ -0.43
CLN3-220ENST00000566040 PA2G4Q9UQ80 394 aaKnown RBP12.38□□□□□ -0.43
CLN3-220ENST00000566040 TRPM7Q96QT4 1865 aa12.38□□□□□ -0.43
CLN3-220ENST00000566040 C6orf229H3BNL8 230 aa12.37□□□□□ -0.43
CLN3-220ENST00000566040 CCDC57Q2TAC2 916 aa12.37□□□□□ -0.43
CLN3-220ENST00000566040 NIM1KQ8IY84 436 aa12.37□□□□□ -0.43
CLN3-220ENST00000566040 GPC2Q8N158 579 aa12.37□□□□□ -0.43
CLN3-220ENST00000566040 ANKIB1Q9P2G1 1089 aa12.37□□□□□ -0.43
CLN3-220ENST00000566040 ZNF804BA4D1E1 1349 aa12.37□□□□□ -0.43
CLN3-220ENST00000566040 KDM2BQ8NHM5 1336 aa12.37□□□□□ -0.43
CLN3-220ENST00000566040 RAD17O75943 681 aa12.36□□□□□ -0.43
CLN3-220ENST00000566040 FGFR2P21802 821 aa12.36□□□□□ -0.43
CLN3-220ENST00000566040 ATP2B4P23634 1241 aa12.36□□□□□ -0.43
CLN3-220ENST00000566040 POLA2Q14181 598 aa12.36□□□□□ -0.43
CLN3-220ENST00000566040 LDHAL6AQ6ZMR3 332 aa12.36□□□□□ -0.43
CLN3-220ENST00000566040 GMLQ99445 158 aa12.36□□□□□ -0.43
CLN3-220ENST00000566040 COPRSQ9NQ92 184 aa12.36□□□□□ -0.43
CLN3-220ENST00000566040 LEMD3Q9Y2U8 911 aa12.36□□□□□ -0.43
CLN3-220ENST00000566040 PSMD14O00487 310 aa12.35□□□□□ -0.43
CLN3-220ENST00000566040 EGFRP00533 1210 aa12.35□□□□□ -0.43
CLN3-220ENST00000566040 GNAI3P08754 354 aa12.35□□□□□ -0.43
CLN3-220ENST00000566040 MVPQ14764 893 aaKnown RBP12.35□□□□□ -0.43
CLN3-220ENST00000566040 SIRT2Q8IXJ6 389 aa12.35□□□□□ -0.43
CLN3-220ENST00000566040 JDP2Q8WYK2 163 aa12.35□□□□□ -0.43
CLN3-220ENST00000566040 MPHOSPH8Q99549 860 aa12.35□□□□□ -0.43
CLN3-220ENST00000566040 EYA2O00167 538 aa12.34□□□□□ -0.43
CLN3-220ENST00000566040 EPS15P42566 896 aa12.34□□□□□ -0.43
CLN3-220ENST00000566040 GMPSP49915 693 aaPredicted RBP12.34□□□□□ -0.43
CLN3-220ENST00000566040 ITPRIPQ8IWB1 547 aa12.34□□□□□ -0.43
CLN3-220ENST00000566040 SSH3Q8TE77 659 aa12.34□□□□□ -0.43
CLN3-220ENST00000566040 MXD3Q9BW11 206 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms