RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ANKRD18BA2A2Z9 1011 aa11.78□□□□□ -0.52
LDLR-211ENST00000560173 PPIP5K2O43314 1243 aa11.78□□□□□ -0.52
LDLR-211ENST00000560173 IGHMBP2P38935 993 aaKnown RBP11.78□□□□□ -0.52
LDLR-211ENST00000560173 KIAA2012Q0VF49 1180 aa11.78□□□□□ -0.52
LDLR-211ENST00000560173 AOC3Q16853 763 aa11.78□□□□□ -0.52
LDLR-211ENST00000560173 LARGE2Q8N3Y3 721 aa11.78□□□□□ -0.52
LDLR-211ENST00000560173 VPS33BQ9H267 617 aa11.78□□□□□ -0.52
LDLR-211ENST00000560173 BICC1Q9H694 974 aaKnown RBP11.78□□□□□ -0.52
LDLR-211ENST00000560173 NSFL1CQ9UNZ2 370 aaKnown RBP11.78□□□□□ -0.52
LDLR-211ENST00000560173 CHMP3Q9Y3E7 222 aa11.78□□□□□ -0.52
LDLR-211ENST00000560173 KDM2BQ8NHM5 1336 aa11.78□□□□□ -0.52
LDLR-211ENST00000560173 SPEF2Q9C093 1822 aa11.77□□□□□ -0.52
LDLR-211ENST00000560173 GLTPD2A6NH11 291 aa11.77□□□□□ -0.53
LDLR-211ENST00000560173 FZD9O00144 591 aa11.77□□□□□ -0.53
LDLR-211ENST00000560173 HSPA1AP0DMV8 641 aaKnown RBP11.77□□□□□ -0.53
LDLR-211ENST00000560173 HSPA1BP0DMV9 641 aaKnown RBP11.77□□□□□ -0.53
LDLR-211ENST00000560173 IFIT5Q13325 482 aaKnown RBP11.77□□□□□ -0.53
LDLR-211ENST00000560173 TBC1D16Q8TBP0 767 aa11.77□□□□□ -0.53
LDLR-211ENST00000560173 JDP2Q8WYK2 163 aa11.77□□□□□ -0.53
LDLR-211ENST00000560173 CLUAP1Q96AJ1 413 aa11.77□□□□□ -0.53
LDLR-211ENST00000560173 YTHDC1Q96MU7 727 aaKnown RBP11.77□□□□□ -0.53
LDLR-211ENST00000560173 POLLQ9UGP5 575 aa11.77□□□□□ -0.53
LDLR-211ENST00000560173 MINPP1Q9UNW1 487 aa11.77□□□□□ -0.53
LDLR-211ENST00000560173 XDHP47989 1333 aa11.77□□□□□ -0.53
LDLR-211ENST00000560173 ZNF541Q9H0D2 1346 aa11.77□□□□□ -0.53
LDLR-211ENST00000560173 C6orf229H3BNL8 230 aa11.76□□□□□ -0.53
LDLR-211ENST00000560173 UFL1O94874 794 aa11.76□□□□□ -0.53
LDLR-211ENST00000560173 UBTFL1P0CB47 393 aaPredicted RBP11.76□□□□□ -0.53
LDLR-211ENST00000560173 CCDC57Q2TAC2 916 aa11.76□□□□□ -0.53
LDLR-211ENST00000560173 NIM1KQ8IY84 436 aa11.76□□□□□ -0.53
LDLR-211ENST00000560173 MPHOSPH8Q99549 860 aa11.76□□□□□ -0.53
LDLR-211ENST00000560173 MEIS3Q99687 375 aa11.76□□□□□ -0.53
LDLR-211ENST00000560173 ANKIB1Q9P2G1 1089 aa11.76□□□□□ -0.53
LDLR-211ENST00000560173 GGA1Q9UJY5 639 aa11.76□□□□□ -0.53
LDLR-211ENST00000560173 RLBP1P12271 317 aa11.75□□□□□ -0.53
LDLR-211ENST00000560173 DPY19L2Q6NUT2 758 aa11.75□□□□□ -0.53
LDLR-211ENST00000560173 TMEM57Q8N5G2 664 aa11.75□□□□□ -0.53
LDLR-211ENST00000560173 ZNF594Q96JF6 807 aaPredicted RBP11.75□□□□□ -0.53
LDLR-211ENST00000560173 GPR101Q96P66 508 aaPredicted RBP11.75□□□□□ -0.53
LDLR-211ENST00000560173 EYA3Q99504 573 aa11.75□□□□□ -0.53
LDLR-211ENST00000560173 RRAGCQ9HB90 399 aa11.75□□□□□ -0.53
LDLR-211ENST00000560173 RCAN3Q9UKA8 241 aa11.75□□□□□ -0.53
LDLR-211ENST00000560173 DDNO94850 711 aaPredicted RBP11.74□□□□□ -0.53
LDLR-211ENST00000560173 ATP2B4P23634 1241 aa11.74□□□□□ -0.53
LDLR-211ENST00000560173 WASHC4Q2M389 1173 aa11.74□□□□□ -0.53
LDLR-211ENST00000560173 TAF7LQ5H9L4 462 aa11.74□□□□□ -0.53
LDLR-211ENST00000560173 FTSJ3Q8IY81 847 aaKnown RBP11.74□□□□□ -0.53
LDLR-211ENST00000560173 DZIP1LQ8IYY4 767 aaKnown RBP11.74□□□□□ -0.53
LDLR-211ENST00000560173 SMC1BQ8NDV3 1235 aa11.74□□□□□ -0.53
LDLR-211ENST00000560173 L3MBTL3Q96JM7 780 aaPredicted RBP11.74□□□□□ -0.53
LDLR-211ENST00000560173 ANKRD2Q9GZV1 360 aa11.74□□□□□ -0.53
LDLR-211ENST00000560173 ZNRF3Q9ULT6 936 aa11.74□□□□□ -0.53
LDLR-211ENST00000560173 LRRFIP2Q9Y608 721 aaKnown RBP11.74□□□□□ -0.53
LDLR-211ENST00000560173 WTIPA6NIX2 430 aaPredicted RBP11.73□□□□□ -0.53
LDLR-211ENST00000560173 POTECB2RU33 542 aa11.73□□□□□ -0.53
LDLR-211ENST00000560173 RIMBP2O15034 1052 aa11.73□□□□□ -0.53
LDLR-211ENST00000560173 GNAI3P08754 354 aa11.73□□□□□ -0.53
LDLR-211ENST00000560173 EIF6P56537 245 aaKnown RBP11.73□□□□□ -0.53
LDLR-211ENST00000560173 CHRNDQ07001 517 aa11.73□□□□□ -0.53
LDLR-211ENST00000560173 LDHAL6AQ6ZMR3 332 aa11.73□□□□□ -0.53
LDLR-211ENST00000560173 MED23Q9ULK4 1368 aa11.73□□□□□ -0.53
LDLR-211ENST00000560173 HDAC5Q9UQL6 1122 aa11.73□□□□□ -0.53
LDLR-211ENST00000560173 A0A1B0GUL6 1792 aa11.72□□□□□ -0.53
LDLR-211ENST00000560173 YDJCA8MPS7 323 aa11.72□□□□□ -0.53
LDLR-211ENST00000560173 RFX5P48382 616 aaPredicted RBP11.72□□□□□ -0.53
LDLR-211ENST00000560173 GPC2Q8N158 579 aa11.72□□□□□ -0.53
LDLR-211ENST00000560173 ZC3H12CQ9C0D7 883 aaKnown RBP11.72□□□□□ -0.53
LDLR-211ENST00000560173 DBNDD1Q9H9R9 158 aa11.72□□□□□ -0.53
LDLR-211ENST00000560173 CNNM1Q9NRU3 951 aa11.72□□□□□ -0.53
LDLR-211ENST00000560173 LEMD3Q9Y2U8 911 aa11.72□□□□□ -0.53
LDLR-211ENST00000560173 ZNF804BA4D1E1 1349 aa11.71□□□□□ -0.53
LDLR-211ENST00000560173 ECE2O60344 883 aa11.71□□□□□ -0.53
LDLR-211ENST00000560173 VEGFAP15692 232 aaPredicted RBP11.71□□□□□ -0.53
LDLR-211ENST00000560173 CXCL9Q07325 125 aa11.71□□□□□ -0.53
LDLR-211ENST00000560173 DOK7Q18PE1 504 aa11.71□□□□□ -0.53
LDLR-211ENST00000560173 ITPRIPQ8IWB1 547 aa11.71□□□□□ -0.53
LDLR-211ENST00000560173 HELBQ8NG08 1087 aaPredicted RBP11.71□□□□□ -0.53
LDLR-211ENST00000560173 KLHDC4Q8TBB5 520 aa11.71□□□□□ -0.53
LDLR-211ENST00000560173 PANK1Q8TE04 598 aa11.71□□□□□ -0.53
LDLR-211ENST00000560173 PUS3Q9BZE2 481 aaKnown RBP11.71□□□□□ -0.53
LDLR-211ENST00000560173 IRS2Q9Y4H2 1338 aa11.7□□□□□ -0.54
LDLR-211ENST00000560173 SNAP23O00161 211 aa11.7□□□□□ -0.54
LDLR-211ENST00000560173 TAF5LO75529 589 aa11.7□□□□□ -0.54
LDLR-211ENST00000560173 GNAI2P04899 355 aa11.7□□□□□ -0.54
LDLR-211ENST00000560173 MS4A1P11836 297 aa11.7□□□□□ -0.54
LDLR-211ENST00000560173 KLRK1P26718 216 aa11.7□□□□□ -0.54
LDLR-211ENST00000560173 PTPN12Q05209 780 aaKnown RBP11.7□□□□□ -0.54
LDLR-211ENST00000560173 MTX1Q13505 466 aa11.7□□□□□ -0.54
LDLR-211ENST00000560173 LRRC24Q50LG9 513 aa11.7□□□□□ -0.54
LDLR-211ENST00000560173 RIPOR2Q9Y4F9 1068 aa11.7□□□□□ -0.54
LDLR-211ENST00000560173 GJA3Q9Y6H8 435 aa11.7□□□□□ -0.54
LDLR-211ENST00000560173 MROH5Q6ZUA9 1318 aa11.69□□□□□ -0.54
LDLR-211ENST00000560173 IQCA1LA6NCM1 817 aa11.69□□□□□ -0.54
LDLR-211ENST00000560173 PLIN1O60240 522 aa11.69□□□□□ -0.54
LDLR-211ENST00000560173 RAD17O75943 681 aa11.69□□□□□ -0.54
LDLR-211ENST00000560173 KCNJ4P48050 445 aa11.69□□□□□ -0.54
LDLR-211ENST00000560173 TNIP1Q15025 636 aa11.69□□□□□ -0.54
LDLR-211ENST00000560173 CIAPIN1Q6FI81 312 aa11.69□□□□□ -0.54
LDLR-211ENST00000560173 C15orf52Q6ZUT6 534 aaKnown RBP11.69□□□□□ -0.54
LDLR-211ENST00000560173 TXNRD3Q86VQ6 643 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms