RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SURF6O75683 361 aaKnown RBP11.44□□□□□ -0.58
LDLR-210ENST00000559340 CIAO1O76071 339 aa11.44□□□□□ -0.58
LDLR-210ENST00000559340 RFX5P48382 616 aaPredicted RBP11.44□□□□□ -0.58
LDLR-210ENST00000559340 PTPN12Q05209 780 aaKnown RBP11.44□□□□□ -0.58
LDLR-210ENST00000559340 ERC1Q8IUD2 1116 aa11.44□□□□□ -0.58
LDLR-210ENST00000559340 RTKN2Q8IZC4 609 aa11.44□□□□□ -0.58
LDLR-210ENST00000559340 ZBTB47Q9UFB7 747 aaPredicted RBP11.44□□□□□ -0.58
LDLR-210ENST00000559340 BCS1LQ9Y276 419 aa11.44□□□□□ -0.58
LDLR-210ENST00000559340 CCDC88AQ3V6T2 1871 aa11.44□□□□□ -0.58
LDLR-210ENST00000559340 PNMA6EA0A0J9YXQ4 647 aa11.43□□□□□ -0.58
LDLR-210ENST00000559340 RAB11FIP3O75154 756 aa11.43□□□□□ -0.58
LDLR-210ENST00000559340 IL15P40933 162 aaPredicted RBP11.43□□□□□ -0.58
LDLR-210ENST00000559340 CCDC93Q567U6 631 aa11.43□□□□□ -0.58
LDLR-210ENST00000559340 MPNDQ8N594 471 aa11.43□□□□□ -0.58
LDLR-210ENST00000559340 SUPT20HQ8NEM7 779 aa11.43□□□□□ -0.58
LDLR-210ENST00000559340 ZNF594Q96JF6 807 aaPredicted RBP11.43□□□□□ -0.58
LDLR-210ENST00000559340 CEP126Q9P2H0 1117 aa11.43□□□□□ -0.58
LDLR-210ENST00000559340 NOP58Q9Y2X3 529 aaKnown RBP11.43□□□□□ -0.58
LDLR-210ENST00000559340 C21orf2O43822 256 aa11.42□□□□□ -0.58
LDLR-210ENST00000559340 HDAC1Q13547 482 aaPredicted RBP11.42□□□□□ -0.58
LDLR-210ENST00000559340 ANKIB1Q9P2G1 1089 aa11.42□□□□□ -0.58
LDLR-210ENST00000559340 AKAP2Q9Y2D5 859 aa11.42□□□□□ -0.58
LDLR-210ENST00000559340 LEMD3Q9Y2U8 911 aa11.42□□□□□ -0.58
LDLR-210ENST00000559340 PCDHB15Q9Y5E8 787 aa11.42□□□□□ -0.58
LDLR-210ENST00000559340 FER1L6Q2WGJ9 1857 aa11.42□□□□□ -0.58
LDLR-210ENST00000559340 XDHP47989 1333 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 ATP2B4P23634 1241 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 KCNJ4P48050 445 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 METTL24Q5JXM2 366 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 DPP8Q6V1X1 898 aaPredicted RBP11.41□□□□□ -0.58
LDLR-210ENST00000559340 C7orf43Q8WVR3 580 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 GCC1Q96CN9 775 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 EYA3Q99504 573 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 SIL1Q9H173 461 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 VPS33BQ9H267 617 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 DCTPP1Q9H773 170 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 MINPP1Q9UNW1 487 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 NSFL1CQ9UNZ2 370 aaKnown RBP11.41□□□□□ -0.58
LDLR-210ENST00000559340 RIPOR2Q9Y4F9 1068 aa11.41□□□□□ -0.58
LDLR-210ENST00000559340 LRRC37AA6NMS7 1700 aa11.4□□□□□ -0.58
LDLR-210ENST00000559340 CHRNDQ07001 517 aa11.4□□□□□ -0.58
LDLR-210ENST00000559340 UBE4AQ14139 1066 aa11.4□□□□□ -0.58
LDLR-210ENST00000559340 SIRT2Q8IXJ6 389 aa11.4□□□□□ -0.58
LDLR-210ENST00000559340 KLHDC4Q8TBB5 520 aa11.4□□□□□ -0.58
LDLR-210ENST00000559340 KIF1BPQ96EK5 621 aa11.4□□□□□ -0.58
LDLR-210ENST00000559340 GPBP1L1Q9HC44 474 aaPredicted RBP11.4□□□□□ -0.58
LDLR-210ENST00000559340 PODXL2Q9NZ53 605 aa11.4□□□□□ -0.58
LDLR-210ENST00000559340 ZNF219Q9P2Y4 722 aaPredicted RBP11.4□□□□□ -0.58
LDLR-210ENST00000559340 GGA1Q9UJY5 639 aa11.4□□□□□ -0.58
LDLR-210ENST00000559340 PA2G4Q9UQ80 394 aaKnown RBP11.4□□□□□ -0.58
LDLR-210ENST00000559340 A0A1B0GUL6 1792 aa11.39□□□□□ -0.59
LDLR-210ENST00000559340 DICER1Q9UPY3 1922 aaKnown RBP11.39□□□□□ -0.59
LDLR-210ENST00000559340 C6orf229H3BNL8 230 aa11.39□□□□□ -0.59
LDLR-210ENST00000559340 PDE8BO95263 885 aa11.39□□□□□ -0.59
LDLR-210ENST00000559340 LRRC24Q50LG9 513 aa11.39□□□□□ -0.59
LDLR-210ENST00000559340 ARHGAP27Q6ZUM4 889 aa11.39□□□□□ -0.59
LDLR-210ENST00000559340 PSMD1Q99460 953 aa11.39□□□□□ -0.59
LDLR-210ENST00000559340 PUS3Q9BZE2 481 aaKnown RBP11.39□□□□□ -0.59
LDLR-210ENST00000559340 GPR108Q9NPR9 543 aa11.39□□□□□ -0.59
LDLR-210ENST00000559340 PPP4R2Q9NY27 417 aa11.39□□□□□ -0.59
LDLR-210ENST00000559340 SBF1O95248 1867 aa11.38□□□□□ -0.59
LDLR-210ENST00000559340 G3V3G9 751 aa11.38□□□□□ -0.59
LDLR-210ENST00000559340 IFIT1P09914 478 aaKnown RBP11.38□□□□□ -0.59
LDLR-210ENST00000559340 SLC5A1P13866 664 aa11.38□□□□□ -0.59
LDLR-210ENST00000559340 GPSM2P81274 684 aa11.38□□□□□ -0.59
LDLR-210ENST00000559340 FKBP4Q02790 459 aaKnown RBP eCLIP11.38□□□□□ -0.59
LDLR-210ENST00000559340 DCAF8Q5TAQ9 597 aa11.38□□□□□ -0.59
LDLR-210ENST00000559340 ATG9AQ7Z3C6 839 aa11.38□□□□□ -0.59
LDLR-210ENST00000559340 CCDC136Q96JN2 1154 aa11.38□□□□□ -0.59
LDLR-210ENST00000559340 ZC3H12CQ9C0D7 883 aaKnown RBP11.38□□□□□ -0.59
LDLR-210ENST00000559340 TAOK3Q9H2K8 898 aa11.38□□□□□ -0.59
LDLR-210ENST00000559340 WWC3Q9ULE0 1092 aa11.38□□□□□ -0.59
LDLR-210ENST00000559340 EXOC6BQ9Y2D4 811 aa11.38□□□□□ -0.59
LDLR-210ENST00000559340 ZNF804BA4D1E1 1349 aa11.37□□□□□ -0.59
LDLR-210ENST00000559340 LTBP3Q9NS15 1303 aa11.37□□□□□ -0.59
LDLR-210ENST00000559340 UFL1O94874 794 aa11.37□□□□□ -0.59
LDLR-210ENST00000559340 PUM3Q15397 648 aaKnown RBP11.37□□□□□ -0.59
LDLR-210ENST00000559340 CLASRPQ8N2M8 674 aaKnown RBP11.37□□□□□ -0.59
LDLR-210ENST00000559340 LPIN2Q92539 896 aa11.37□□□□□ -0.59
LDLR-210ENST00000559340 RTFDC1Q9BY42 306 aaPredicted RBP11.37□□□□□ -0.59
LDLR-210ENST00000559340 LRRCC1Q9C099 1032 aa11.37□□□□□ -0.59
LDLR-210ENST00000559340 TAF5LO75529 589 aa11.36□□□□□ -0.59
LDLR-210ENST00000559340 TFCP2Q12800 502 aa11.36□□□□□ -0.59
LDLR-210ENST00000559340 ATP2B3Q16720 1220 aa11.36□□□□□ -0.59
LDLR-210ENST00000559340 WASHC4Q2M389 1173 aa11.36□□□□□ -0.59
LDLR-210ENST00000559340 CAVIN4Q5BKX8 364 aa11.36□□□□□ -0.59
LDLR-210ENST00000559340 HELBQ8NG08 1087 aaPredicted RBP11.36□□□□□ -0.59
LDLR-210ENST00000559340 TBC1D16Q8TBP0 767 aa11.36□□□□□ -0.59
LDLR-210ENST00000559340 RHPN1Q8TCX5 695 aa11.36□□□□□ -0.59
LDLR-210ENST00000559340 MYH13Q9UKX3 1938 aa11.36□□□□□ -0.59
LDLR-210ENST00000559340 SASH1O94885 1247 aa11.35□□□□□ -0.59
LDLR-210ENST00000559340 HSPA6P17066 643 aa11.35□□□□□ -0.59
LDLR-210ENST00000559340 GORABQ5T7V8 394 aa11.35□□□□□ -0.59
LDLR-210ENST00000559340 IFFO2Q5TF58 517 aa11.35□□□□□ -0.59
LDLR-210ENST00000559340 ANKRD45Q5TZF3 282 aa11.35□□□□□ -0.59
LDLR-210ENST00000559340 C15orf52Q6ZUT6 534 aaKnown RBP11.35□□□□□ -0.59
LDLR-210ENST00000559340 CENPQQ7L2Z9 268 aaPredicted RBP11.35□□□□□ -0.59
LDLR-210ENST00000559340 VPS37DQ86XT2 251 aa11.35□□□□□ -0.59
LDLR-210ENST00000559340 SMC5Q8IY18 1101 aa11.35□□□□□ -0.59
LDLR-210ENST00000559340 JDP2Q8WYK2 163 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms