RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 GOLGB1Q14789 3259 aaKnown RBP18.57■□□□□ 0.56
VIPAS39-210ENST00000557466 DPP8Q6V1X1 898 aaPredicted RBP18.57■□□□□ 0.56
VIPAS39-210ENST00000557466 MINPP1Q9UNW1 487 aa18.57■□□□□ 0.56
VIPAS39-210ENST00000557466 LMNB1P20700 586 aa18.56■□□□□ 0.56
VIPAS39-210ENST00000557466 MTX1Q13505 466 aa18.56■□□□□ 0.56
VIPAS39-210ENST00000557466 C9orf131Q5VYM1 1079 aa18.56■□□□□ 0.56
VIPAS39-210ENST00000557466 KLHDC4Q8TBB5 520 aa18.56■□□□□ 0.56
VIPAS39-210ENST00000557466 RTFDC1Q9BY42 306 aaPredicted RBP18.56■□□□□ 0.56
VIPAS39-210ENST00000557466 ZNF277Q9NRM2 450 aaPredicted RBP18.56■□□□□ 0.56
VIPAS39-210ENST00000557466 RNF181Q9P0P0 153 aa18.56■□□□□ 0.56
VIPAS39-210ENST00000557466 NSFL1CQ9UNZ2 370 aaKnown RBP18.56■□□□□ 0.56
VIPAS39-210ENST00000557466 XDHP47989 1333 aa18.55■□□□□ 0.56
VIPAS39-210ENST00000557466 LDHAL6AQ6ZMR3 332 aa18.55■□□□□ 0.56
VIPAS39-210ENST00000557466 PUS3Q9BZE2 481 aaKnown RBP18.55■□□□□ 0.56
VIPAS39-210ENST00000557466 PODXL2Q9NZ53 605 aa18.55■□□□□ 0.56
VIPAS39-210ENST00000557466 IARSP41252 1262 aaKnown RBP18.54■□□□□ 0.56
VIPAS39-210ENST00000557466 PTPN12Q05209 780 aaKnown RBP18.54■□□□□ 0.56
VIPAS39-210ENST00000557466 CHRNDQ07001 517 aa18.54■□□□□ 0.56
VIPAS39-210ENST00000557466 CNNM1Q9NRU3 951 aa18.54■□□□□ 0.56
VIPAS39-210ENST00000557466 ZBTB40Q9NUA8 1239 aa18.54■□□□□ 0.56
VIPAS39-210ENST00000557466 ANKIB1Q9P2G1 1089 aa18.54■□□□□ 0.56
VIPAS39-210ENST00000557466 POLLQ9UGP5 575 aa18.54■□□□□ 0.56
VIPAS39-210ENST00000557466 SUPT16HQ9Y5B9 1047 aaKnown RBP18.54■□□□□ 0.56
VIPAS39-210ENST00000557466 PNMA6EA0A0J9YXQ4 647 aa18.53■□□□□ 0.56
VIPAS39-210ENST00000557466 SRGAP3O43295 1099 aa18.53■□□□□ 0.56
VIPAS39-210ENST00000557466 UFL1O94874 794 aa18.53■□□□□ 0.56
VIPAS39-210ENST00000557466 LRRC24Q50LG9 513 aa18.53■□□□□ 0.56
VIPAS39-210ENST00000557466 SUPT20HQ8NEM7 779 aa18.53■□□□□ 0.56
VIPAS39-210ENST00000557466 TBC1D16Q8TBP0 767 aa18.53■□□□□ 0.56
VIPAS39-210ENST00000557466 GPR101Q96P66 508 aaPredicted RBP18.53■□□□□ 0.56
VIPAS39-210ENST00000557466 UTRNP46939 3433 aa18.52■□□□□ 0.56
VIPAS39-210ENST00000557466 AOC3Q16853 763 aa18.52■□□□□ 0.56
VIPAS39-210ENST00000557466 GGA1Q9UJY5 639 aa18.52■□□□□ 0.56
VIPAS39-210ENST00000557466 PA2G4Q9UQ80 394 aaKnown RBP18.52■□□□□ 0.56
VIPAS39-210ENST00000557466 WTIPA6NIX2 430 aaPredicted RBP18.51■□□□□ 0.55
VIPAS39-210ENST00000557466 C6orf229H3BNL8 230 aa18.51■□□□□ 0.55
VIPAS39-210ENST00000557466 PPIP5K2O43314 1243 aa18.51■□□□□ 0.55
VIPAS39-210ENST00000557466 CEP85Q6P2H3 762 aa18.51■□□□□ 0.55
VIPAS39-210ENST00000557466 HELBQ8NG08 1087 aaPredicted RBP18.51■□□□□ 0.55
VIPAS39-210ENST00000557466 CRBNQ96SW2 442 aa18.51■□□□□ 0.55
VIPAS39-210ENST00000557466 ANKRD2Q9GZV1 360 aa18.51■□□□□ 0.55
VIPAS39-210ENST00000557466 CHMP4BQ9H444 224 aaKnown RBP18.51■□□□□ 0.55
VIPAS39-210ENST00000557466 RIPOR2Q9Y4F9 1068 aa18.51■□□□□ 0.55
VIPAS39-210ENST00000557466 EYA2O00167 538 aa18.5■□□□□ 0.55
VIPAS39-210ENST00000557466 TAF5LO75529 589 aa18.5■□□□□ 0.55
VIPAS39-210ENST00000557466 ATP2B4P23634 1241 aa18.5■□□□□ 0.55
VIPAS39-210ENST00000557466 ATP8B2P98198 1209 aa18.5■□□□□ 0.55
VIPAS39-210ENST00000557466 KIAA2012Q0VF49 1180 aa18.5■□□□□ 0.55
VIPAS39-210ENST00000557466 POLA2Q14181 598 aa18.5■□□□□ 0.55
VIPAS39-210ENST00000557466 SIL1Q9H173 461 aa18.5■□□□□ 0.55
VIPAS39-210ENST00000557466 COPRSQ9NQ92 184 aa18.5■□□□□ 0.55
VIPAS39-210ENST00000557466 ARAP2Q8WZ64 1704 aa18.49■□□□□ 0.55
VIPAS39-210ENST00000557466 PSME4Q14997 1843 aa18.49■□□□□ 0.55
VIPAS39-210ENST00000557466 ATG9AQ7Z3C6 839 aa18.49■□□□□ 0.55
VIPAS39-210ENST00000557466 LARGE2Q8N3Y3 721 aa18.49■□□□□ 0.55
VIPAS39-210ENST00000557466 SSH3Q8TE77 659 aa18.49■□□□□ 0.55
VIPAS39-210ENST00000557466 MROH5Q6ZUA9 1318 aa18.49■□□□□ 0.55
VIPAS39-210ENST00000557466 SCN9AQ15858 1988 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 MED23Q9ULK4 1368 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 SNAP23O00161 211 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 RIMBP2O15034 1052 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 YY1P25490 414 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 WASHC4Q2M389 1173 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 EYA3Q99504 573 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 VPS33BQ9H267 617 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 FBXO3Q9UK99 471 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 LEMD3Q9Y2U8 911 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 ZNF646O15015 1829 aaPredicted RBP18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 ZNF804BA4D1E1 1349 aa18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 ZC3H4Q9UPT8 1303 aaKnown RBP18.48■□□□□ 0.55
VIPAS39-210ENST00000557466 CIAO1O76071 339 aa18.47■□□□□ 0.55
VIPAS39-210ENST00000557466 KLRK1P26718 216 aa18.47■□□□□ 0.55
VIPAS39-210ENST00000557466 METTL24Q5JXM2 366 aa18.47■□□□□ 0.55
VIPAS39-210ENST00000557466 NIM1KQ8IY84 436 aa18.47■□□□□ 0.55
VIPAS39-210ENST00000557466 VGLL2Q8N8G2 317 aa18.47■□□□□ 0.55
VIPAS39-210ENST00000557466 KCNJ4P48050 445 aa18.46■□□□□ 0.55
VIPAS39-210ENST00000557466 JDP2Q8WYK2 163 aa18.46■□□□□ 0.55
VIPAS39-210ENST00000557466 ZNF541Q9H0D2 1346 aa18.46■□□□□ 0.55
VIPAS39-210ENST00000557466 IRS2Q9Y4H2 1338 aa18.46■□□□□ 0.55
VIPAS39-210ENST00000557466 SIRT2Q8IXJ6 389 aa18.45■□□□□ 0.54
VIPAS39-210ENST00000557466 FZD9O00144 591 aa18.44■□□□□ 0.54
VIPAS39-210ENST00000557466 PDE8BO95263 885 aa18.44■□□□□ 0.54
VIPAS39-210ENST00000557466 IL15P40933 162 aaPredicted RBP18.44■□□□□ 0.54
VIPAS39-210ENST00000557466 TXNRD3Q86VQ6 643 aa18.44■□□□□ 0.54
VIPAS39-210ENST00000557466 RPAP2Q8IXW5 612 aaPredicted RBP18.44■□□□□ 0.54
VIPAS39-210ENST00000557466 ZC3H12CQ9C0D7 883 aaKnown RBP18.44■□□□□ 0.54
VIPAS39-210ENST00000557466 DBNDD1Q9H9R9 158 aa18.44■□□□□ 0.54
VIPAS39-210ENST00000557466 MYH13Q9UKX3 1938 aa18.43■□□□□ 0.54
VIPAS39-210ENST00000557466 ECE2O60344 883 aa18.43■□□□□ 0.54
VIPAS39-210ENST00000557466 UBE4AQ14139 1066 aa18.43■□□□□ 0.54
VIPAS39-210ENST00000557466 DOK7Q18PE1 504 aa18.43■□□□□ 0.54
VIPAS39-210ENST00000557466 WDR90Q96KV7 1748 aa18.43■□□□□ 0.54
VIPAS39-210ENST00000557466 YDJCA8MPS7 323 aa18.42■□□□□ 0.54
VIPAS39-210ENST00000557466 IRX6P78412 446 aaPredicted RBP18.42■□□□□ 0.54
VIPAS39-210ENST00000557466 C15orf52Q6ZUT6 534 aaKnown RBP18.42■□□□□ 0.54
VIPAS39-210ENST00000557466 ZNRF3Q9ULT6 936 aa18.42■□□□□ 0.54
VIPAS39-210ENST00000557466 HMMRO75330 724 aa18.41■□□□□ 0.54
VIPAS39-210ENST00000557466 SURF6O75683 361 aaKnown RBP18.41■□□□□ 0.54
VIPAS39-210ENST00000557466 FGFR2P21802 821 aa18.41■□□□□ 0.54
VIPAS39-210ENST00000557466 G3BP1Q13283 466 aaKnown RBP eCLIP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms