RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 USP16Q9Y5T5 823 aa15.95■□□□□ 0.14
SHMT2-226ENST00000556825 TTC21BQ7Z4L5 1316 aa15.95■□□□□ 0.14
SHMT2-226ENST00000556825 GNAI3P08754 354 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 FNTAP49354 379 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 HSP90B2PQ58FF3 399 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 ISM2Q6H9L7 571 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 NFXL1Q6ZNB6 911 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 RBM43Q6ZSC3 357 aaKnown RBP15.94■□□□□ 0.14
SHMT2-226ENST00000556825 ARMCX6Q7L4S7 300 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 TNMDQ9H2S6 317 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 PARP3Q9Y6F1 533 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 RGS12O14924 1447 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 NOS1P29475 1434 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 DEPDC5O75140 1603 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 CAMK4Q16566 473 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 BEND6Q5SZJ8 279 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-226ENST00000556825 TSHZ1Q6ZSZ6 1077 aa15.94■□□□□ 0.14
SHMT2-226ENST00000556825 POLR3AO14802 1390 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-226ENST00000556825 ZNF518AQ6AHZ1 1483 aa15.93■□□□□ 0.14
SHMT2-226ENST00000556825 KIDINS220Q9ULH0 1771 aa15.93■□□□□ 0.14
SHMT2-226ENST00000556825 GOLGA6L19H0YKK7 550 aa15.93■□□□□ 0.14
SHMT2-226ENST00000556825 STX6O43752 255 aa15.93■□□□□ 0.14
SHMT2-226ENST00000556825 NRDCO43847 1150 aa15.93■□□□□ 0.14
SHMT2-226ENST00000556825 TXLNAP40222 546 aa15.93■□□□□ 0.14
SHMT2-226ENST00000556825 RAB27AP51159 221 aa15.93■□□□□ 0.14
SHMT2-226ENST00000556825 SNX1Q13596 522 aa15.93■□□□□ 0.14
SHMT2-226ENST00000556825 CKAP2LQ8IYA6 745 aa15.93■□□□□ 0.14
SHMT2-226ENST00000556825 OSBPL5Q9H0X9 879 aaPredicted RBP15.93■□□□□ 0.14
SHMT2-226ENST00000556825 CAPN7Q9Y6W3 813 aa15.93■□□□□ 0.14
SHMT2-226ENST00000556825 KIF3BO15066 747 aa15.92■□□□□ 0.14
SHMT2-226ENST00000556825 CDCA2Q69YH5 1023 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-226ENST00000556825 TRIM65Q6PJ69 517 aa15.92■□□□□ 0.14
SHMT2-226ENST00000556825 CADPS2Q86UW7 1296 aa15.92■□□□□ 0.14
SHMT2-226ENST00000556825 CRACR2AQ9BSW2 395 aa15.92■□□□□ 0.14
SHMT2-226ENST00000556825 FAM204AQ9H8W3 233 aa15.92■□□□□ 0.14
SHMT2-226ENST00000556825 IMPACTQ9P2X3 320 aa15.92■□□□□ 0.14
SHMT2-226ENST00000556825 SDSP20132 328 aa15.92■□□□□ 0.14
SHMT2-226ENST00000556825 SLC8A3P57103 927 aa15.92■□□□□ 0.14
SHMT2-226ENST00000556825 NOL8Q76FK4 1167 aaKnown RBP15.92■□□□□ 0.14
SHMT2-226ENST00000556825 HOMER3Q9NSC5 361 aa15.92■□□□□ 0.14
SHMT2-226ENST00000556825 EIF2AK4Q9P2K8 1649 aaKnown RBP15.92■□□□□ 0.14
SHMT2-226ENST00000556825 FSBPO95073 299 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 CEP112Q8N8E3 955 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 GOLGA1Q92805 767 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 DNAJC25Q9H1X3 360 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 TBC1D2BQ9UPU7 963 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 USP5P45974 858 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 CCT5P48643 541 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 DHX8Q14562 1220 aaKnown RBP15.91■□□□□ 0.14
SHMT2-226ENST00000556825 IQCB1Q15051 598 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 RCSD1Q6JBY9 416 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 TLDC1Q6P9B6 456 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 RINLQ6ZS11 566 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 KIAA1328Q86T90 577 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 C3orf20Q8ND61 904 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 AFAP1L1Q8TED9 768 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 ZBTB10Q96DT7 871 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 SAAL1Q96ER3 474 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 L1RE1Q9UN81 338 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 ZNF232Q9UNY5 417 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 PCDHGA4Q9Y5G9 962 aa15.91■□□□□ 0.14
SHMT2-226ENST00000556825 ATXN2Q99700 1313 aaKnown RBP15.9■□□□□ 0.14
SHMT2-226ENST00000556825 MYO1FO00160 1098 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 ZBTB7BO15156 539 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-226ENST00000556825 CD151P48509 253 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 MAP3K9P80192 1104 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 DNM1Q05193 864 aaKnown RBP15.9■□□□□ 0.14
SHMT2-226ENST00000556825 PPP2R3AQ06190 1150 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 TCP11Q8WWU5 503 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 YTHDC2Q9H6S0 1430 aaKnown RBP15.9■□□□□ 0.14
SHMT2-226ENST00000556825 SYT1P21579 422 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 ATP2B2Q01814 1243 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 EXOSC9Q06265 439 aaKnown RBP15.9■□□□□ 0.14
SHMT2-226ENST00000556825 PDIA5Q14554 519 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 ARMC3Q5W041 872 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 CCDC150Q8NCX0 1101 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 MED14O60244 1454 aa15.9■□□□□ 0.14
SHMT2-226ENST00000556825 TET3O43151 1660 aa15.89■□□□□ 0.14
SHMT2-226ENST00000556825 ERLIN1O75477 346 aa15.89■□□□□ 0.13
SHMT2-226ENST00000556825 NCAPG2Q86XI2 1143 aa15.89■□□□□ 0.13
SHMT2-226ENST00000556825 SIRT2Q8IXJ6 389 aa15.89■□□□□ 0.13
SHMT2-226ENST00000556825 CCDC97Q96F63 343 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-226ENST00000556825 TSPAN18Q96SJ8 248 aa15.89■□□□□ 0.13
SHMT2-226ENST00000556825 DDX19AQ9NUU7 478 aaKnown RBP15.89■□□□□ 0.13
SHMT2-226ENST00000556825 SHOX2O60902 331 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-226ENST00000556825 CDKL5O76039 1030 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 ECEL1O95672 775 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 IMPDH2P12268 514 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 MAB21L3Q8N8X9 362 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 CCDC102AQ96A19 550 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 MPHOSPH8Q99549 860 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 CLSTN2Q9H4D0 955 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.88■□□□□ 0.133e-6■■■■■ 44
SHMT2-226ENST00000556825 POGZQ7Z3K3 1410 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 FANCGO15287 622 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 SKAP2O75563 359 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-226ENST00000556825 NAA25Q14CX7 972 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 SKIDA1Q1XH10 827 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 NEO1Q92859 1461 aa15.88■□□□□ 0.13
SHMT2-226ENST00000556825 FRMD3A2A2Y4 597 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms